Tjac 1 de 1
Tjac 1 de 1
Tjac 1 de 1
By:
Josep Alós Crespí
Advisors:
Dr. Miquel Palmer Vidal & Dra. Beatriz Morales Nin
University Advisor:
Dr. Gabriel Moyà Niell
I certify that I have read this dissertation and that, in my opinion, it is fully
adequate in scope and quality as a dissertation for the degree of Doctor of Philosophy
I certify that I have read this dissertation and that, in my opinion, it is fully
adequate in scope and quality as a dissertation for the degree of Doctor of Philosophy
I certify that I have read this dissertation and that, in my opinion, it is fully
adequate in scope and quality as a dissertation for the degree of Doctor of Philosophy
Humans have non-randomly harvested animals since the origin of our species, resulting
in both ecological and evolutionary changes of wild populations. Considering this fact,
this Thesis tested the hypothesis that recreational fishing is a non-random selection
process for some life-history traits of costal sedentary fishes. This Thesis provides both
empirical and theoretical evidence demonstrating how the variability existing in wild
fisheries.
variability is a necessary condition. As a first step, two life-history traits were selected
that may be a priori good candidates for being fishery-selected: growth and
reproduction. The wild variability in these traits of Serranus scriba were estimated using
techniques.
This Thesis demonstrates how recreational fishing can cause local depletion and is
size-selective per se. Fishing mortality is not necessarily linked to harvesting because
some individuals may be released after being fished for voluntary (catch-and-release) or
mandatory (minimum legal size) reasons. The potential survival rate of individuals
released by anglers was estimated for the first time in a Mediterranean marine coastal
fish, with special emphasis on Serranus scriba. Post-release mortality rates are generally
low but can be critical depending on the species’ environmental context and fishing
gear. This Thesis also provides management options for sustainable exploitation by
induced selection process against individuals with larger growth ability after maturation
theoretical and empirical expectations of this selection have been studied in wild
population connectivity and gene flow. Individuals from highly exploited populations
are smaller, have lower growth rates after maturation and invest more energy in
reproduction than fish from no-take marine protected areas, where natural selection
drives these life-history traits in the opposite direction. Elsewhere, it has been
demonstrated that most of those life-history traits are heritable and that consistent
fishing-induced selection over time can induce evolution. The plausibility of this fact is
discussed under the perspective of yield sustainability for the first time in the
Mediterranean.
individual-based model in which fish and fishers move within an empirically supported
scenario was performed. The results show a consistent selection toward individuals that
show less exploratory behaviour. It is suggested that fishing-induced selection is most
likely related to a wide range of potentially correlated traits, including life history,
Overall, this Thesis establishes the basis of the fisheries-induced selection in marine
coastal fishes in the Mediterranean and discusses its implications for a proper resources
management, aimed to enhance sustainable fisheries and therefore mitigate the plausible
poblaciones salvajes. Teniendo en cuenta este hecho, esta Tesis testa la hipótesis de que
la pesca recreativa no es un proceso de azar para algunos rasgos de la historia vital de los
peces. Esta Tesis proporciona evidencias, tanto empíricas como teóricas, que
demuestran que la variabilidad existente en estos rasgos de las poblaciones salvajes puede
Los procesos de selección operan a nivel individual. Por lo tanto, es una condición
paso, se seleccionaron un número de rasgos de historia vital candidatos para ser fuente
Esta Tesis demuestra como la pesca recreativa puede generar una disminución en la
biomasa además de ser talla-selectiva. La mortalidad por pesca no tiene porque estar
necesariamente ligada a recolección debido a que los peces pueden ser voluntariamente
(captura y suelta deportiva) o obligatoriamente (tallas mínimas legales) devueltos al agua
se ha estimado por primera vez en peces marinos costeros que habitan el Mediterráneo,
con un especial énfasis en S. scriba. Las tasas de mortalidad son en general bajas, pero
pueden llegar a ser críticas dependiendo del contexto ambiental y el arte de pesca. Esta
por la pesca que actúa en contra de fenotipos con mayor capacidad de crecer después de l
maduración sexual y una menor inversión en reproducción que sigue las reglas generales
poblaciones altamente explotadas son de menor talla, tienen una limitada capacidad de
crecer y tiene una mayor inversión en reproducción que los individuos que habitan
reservas marinas totales, donde la selección natural juega el papel opuesto. Existen
evidencies claras que los rasgos de historia vital estudiados tienen un alto componente
comportamiento con base empírica. Los resultados mostraron una consistente selección
a favor de fenotipos con un grado de exploración y de actividad menor. Esto sugiere que
el proceso de selección por pesca esta probablemente causada por un rango de rasgos
En resumen, esta Tesis establece las bases de los procesos de selección por pesca en
peces marinos costeros del Mediterráneo, y discute sus implicaciones para una correcta
gestión para potenciar la pesca sostenible y mitigar así los posibles efectos negativos de
Although my name is printed on the cover of this Thesis, the singular form
of the first person does not appear within its chapters. I do this to be
grateful to my advisors and collaborators, and to the support of my family,
colleagues and friends.
aquesta Tesis Doctoral amb vosaltres. Puc afirmar que he estat molt afortunat de
treballar i aprendre al vostre costat. La vostre supervisió, tant personal com humana, la
vostre confiança, i els vostres consells, han donat a la meva jove carrera investigadora
molt amb vosaltres i sempre estaré agraït per el suport incondicional que he rebut per la
vostre part. Esper que el futur ens depari multitud de bons moments, tant científics com
personals, com els que hem viscut durant aquest quatre anys.
Aquesta Tesis ha estat recolzada econòmicament per una Beca de Formació del
estat recalçades també per els projectes d’investigació ROQUER (ref: CTM2005-
00283), i REC2 (ref: CTM-2011-23835). Tots ells finançats per el Ministeri
Ignasi, Miquel, David, Carlos, Itzi, Sílvia, i tot el personal del IMEDEA. Sense la
vostre ajuda, ànims i suport, aquesta Tesis no hagues estat possible. Moltes gràcies per
les sortides de camp, les brain-storming sessions, les ajudes amb els mostreigs, així com
per tu gràcies especials per la multitud de coffee-breaks fets, quantes idees bones han
sortit d’aquests moment. Gràcies també per introduir-me en el mon dels primers estadis
poder desfruitar de moltes més ensaïmades amb tots vosaltres els divendres a mig dia.
Gotzon i Toni (IMEDEA) gràcies per la vostre ajuda en la pare de conectivitat i donar
Biel (UIB), Salud (IEO) i Toni (UIB), moltes gràcies per introduir-me en el món de
la recerca quan només era un estudiant de Biologia a la UIB. Biel, gràcies especials per
ser el Ponent de la Univeristat d’aquesta Tesis. Part del meu instint de recerca és gràcies
a vosaltres i a tots els que varem compartir aquella època al laboratori de Biologia
Marina. A tota la gent que m’ha ajudat i ha recolzat aquesta Tesis de la Direcció
General de Pesca (Govern Balear), moltes gràcies. Toni, Xisco, Amàlia, Elena, M. del
Mar, Juanita, Imma, gràcies per la vostre ajuda i el vostre suport en algun moment
durant el transcurs d’aquesta Tesis. Pedro i Irine de la Reserva Marina de Palma, moltes
gràcies per la vostre col·laboració, podeu estar orgullosos de la feina que esteu fent a la
reserva.
No puc oblidar la multitud de pescadors recreatius anònims, coneguts, amics i
familiars que han col·laborat en el marc d’aquest estudi. Moltes gràcies a tots i cada un
de vosaltres. Una bona part del treball es per vosaltres, perquè pugem seguir gaudint la
A mis amigos y colegas del IIM, Fran, Alex, Gonzalo y David, sois un equipo
increíble, tanto como investigadores como personas. Gracias por los ánimos y por la
multitud de comentarios positivos hechos en este trabajo. Una parte de este trabajo es
vuestra también, y recordad, nosotros somos jóvenes, hay que luchar por el futuro.
To my international collaborators, thanks a lot. Robert (IGB), viel von dieser Arbeit
ist auch deins, Danke. Thomas (IGB), vielen Dank für deine Kommentare und deine
Hilfe während meines Aufenthaltes in Berlin, Danke für all die erstaunlichen Tage
Fischen. Sue, Luiz, Gabe and Elena (FWC), thanks for your hospitality and your help.
Joel and Sara (FWC), thanks, it was awesome enjoy with you a redfish sampling season.
Especial thanks for the fishing trips Joel, the fishing weekend down to the Florida Keys
Finalment, Àngela, tu has esta la meva inspiració. Quan he estat disgustat, cansat o
desmoralitzat, tu sempre m’has donat ànims per seguir. Necessitaria més d’una Tesis per
enumerar totes les vegades que m’has ajudat amb paraules positives i d’ànims. Gràcies
per tot, realment soc molt afortunat de tenir-te devora. Jimmy, gràcies per aquesta
portada, i gràcies per tots els sopars i bon moment s amb la teva dona, la teva filla i na
petita, podem dir que una part d’aquesta Tesis és també per sa paina. Marta i Tomàs,
persona que ens vares encoratjar i espitjar a estudiar a jo i al meus germans quan érem
uns nins, inclús en situacions molt complicades. No hi va haver excuses per donar-nos
tot el teu esforç i temps, sacrificant-te tu mateixa com a conseqüència. Aquí estan els
resultats del teu esforç. Mamà, ara seré Doctor en Ecologia Marina fent i desfruitant del
cuiner. Tot el teu esforç ha estat recompensat, i sempre estarem agraïts. No te podem
tornar el teu temps, però si que podem fer-te protagonista dels nostre èxits, per que
realment són teus també. Mamà, aquest treball està dedicat a Tu.
List of manuscripts published
Alós, J., Palmer, M., Balle, S., Grau, A. M., and Morales-Nin, B. 2010. Individual
growth pattern and variability in Serranus scriba: a Bayesian analysis. ICES
Journal of Marine Science, 67: 502-512. (Chapter 2)
Alonso-Fernández, A., Alós, J., Grau, A., Dominguez-Petit, R., and Saborido-Rey, F.
2011. The Use of Histological Techniques to Study the Reproductive Biology of
the Hermaphroditic Mediterranean Fishes Coris julis, Serranus scriba, and
Diplodus annularis. Marine and Coastal Fisheries, 3: 145-159. (Chapter 3)
Alós, J., Alonso-Fernández, A., Catalàn, I., Palmer, M., and Lowerre-Barbieri, S. (in
press). Individual variability in the factors that affect reproductive potential in
Serranus scriba. Scientia Marina. (Chapter 3)
Alós, J., and Arlinghaus, R. 2013. Impacts of partial marine protected areas on coastal
fish communities exploited by recreational angling. Fisheries Research, 137: 88-
96. (Chapter 4)
Alós, J. 2008. Influence of anatomical hooking depth, capture depth, and venting on
mortality of painted comber (Serranus scriba) released by recreational anglers.
ICES Journal of Marine Science, 65: 1620-1625. (Chapter 5)
Alós, J., Palmer, M., Grau, A. M., and Deudero, S. 2008. Effects of hook size and
barbless hooks on hooking injury, catch per unit effort, and fish size in a mixed-
species recreational fishery in the western Mediterranean Sea. ICES Journal of
Marine Science, 65: 899-905. (Chapter 6)
Alós, J., Arlinghaus, R., Palmer, M., March, D., and Alvarez, I. 2009. The influence of
type of natural bait on fish catches and hooking location in a mixed-species
marine recreational fishery, with implications for management. Fisheries
Research, 97: 270-277. (Chapter 7)
Alós, J., Arlinghaus, R., Palmer, M., Catalan, I., Basterretxea, G., Jordi, A., Alonso-
Fernández, A., et al. (submitted). Recreational harvesting can induce
evolutionary change of life-histories of an exploited marine fish at surprisingly
restricted geographical scales. Evolutionary Applications. (Chapter 8)
Alós, J., Palmer, M., and Arlinghaus, R. 2012. Consistent Selection towards Low
Activity Phenotypes When Catchability Depends on Encounters among
Human Predators and Fish. Plos One, 7: e48030. (Chapter 9)
List of tables
Table 8-1 Bayesian posterior distribution (MCMC) of means the life-history traits
(reproduction investment in year -1, infinite size inn mm of otolith, age of maturation in
years and immature growth rate referred to otolith scale in mm year -1) for the beam
trawl and the hook-and-line samples............................................................................ 74
Table 8-2 Results of the two Generalized Lineal Mixed effect models (GLMMs) fitted
to test the relationship between the direct measure of reproduction investment (batch
fecundity) and (A) the sampling method (beam trawl and hook-and-line), and (B) the
populations (inner of Palma Bay, average population and National Park of Cabrera). In
both models Fish size was also included as fixed factor and Fishing ID as random
factor. The GLMM developed for populations also included the temporal variable
month. The table shows the parameters include in the final model (the MCMC mean
of the parameters, the lower and upper highest 95% credibility intervals (HDP) and the
significance of the parameter. Interactions were not significant and were not included.
...................................................................................................................................... 76
Table 8-3 Posterior distribution (MCMC populations means, s.d. and Bayesian
credibility intervals) of the life-history traits (reproduction investment in year -1, infinite
size (mm of otlith), age of maturation in years and immature growth rate referred to
otolith scale in mm year -1) estimated for the three analysed populations (inner of Palma
Bay, average population and National Park of Cabrera). .............................................. 78
Table 8-4 Results of the three Generalized Lineal Mixed effect models (GLMMs)
fitted to test the relationship between the relative abundance (fish*30min*angler), fish
size (mm) and ages (years) of vulnerable Serranus scriba sampled in the inner of Palma
Bay, the average population and the National Park of Cabrera. The full model (without
reduction) includes the fixed factors population, depth (m), angler, bait and month. The
abundance GLMM have repeated measures within day and the size and age were
repeated measures of fishing sessions within day which were included as random effects.
The table shows the parameters include in the final model (the MCMC mean of the
parameters, the lower and upper highest 95% credibility intervals (HDP) and the
significance of the parameter. ....................................................................................... 81
List of figures
Figure 8.1 Picture of Serranus scriba (Family: Serranidae) (top left panel). Map locating
the Mallorca Island in the Balearic Sea (NW Mediterranean) (bottom left panel).The
spatial location of the 25 sites of eggs releasing is showed in the right panel highlighting
the high exploited (recreational fishing) area located in Palma Bay and the waters of
National Park of Cabrera where recreational fishing is not allowed (No-take MPA).
Black-white gradient represents to be the spatial distribution of the recreational fishing
effort in the Mallorca Island proyected in a raster of 250 m x 250 m of (n = 1,430).
Recreational anglers were censed by the coastal guards (data obtained in a work-package
of the Project CONFLICT)......................................................................................... 60
Figure 8.2 Self-recruitment (10 years mean and s.d.) of the 25 sites of eggs release
considered in this study (upper panel). The highest values observed in the inner part of
Palma Bay (sites 6 and 7) and the National Park of Cabrera (sites 14, 15 and 16) were
showed in dark grey and black respectively. An average, in terms of SC, population
(sites 9 and 10) is showed in light grey. The bottom panels shows the spatial-plots of a
fixed kernel probability distributions (estimated in raster of 250 m x 250 m) of the
positions at the end of the PLD duration of the virtual eggs released in each of these
three main areas. ........................................................................................................... 70
Figure 8.3 Directional flow diagram showing the paired direct and indirect connectivity
(black arrows) calculated among the inner part of Palma Bay (PB), the open population
(OP) and the National Park of Cabrera (NPC) (each number can be interpreted as a %
of eggs released in an specific sub-populations). Indirect connectivity values are the
maximum values of connectivity over 50 years. The grey arrows show the connectivity
attributed by other sub-populations. 360º black arrows are the self-recruitment values
for each specific sub-population.................................................................................... 72
Figure 8.4 Box-plot of the Bayesian individual means of the life-history parameters
(reproduction investment, infinite size, age of maturation and immature growth)
estimated for the beam trawl (BT in light grey) and hook-and-line (HL in dark grey)
individuals..................................................................................................................... 73
Figura 8.5 Bayesian Credibility Intervals (2.5%, 50%, and 97.5%) of the posterior
distribution of the population’s means estimated for each LH trait to assess with the
differences between-populations................................................................................... 79
Figura 8.6 Chronograms of ten years of the daily surface temperature (ºC) and
concentration of chlorophyll-a (mg m-3) in the inner part of Palma Bay (PB), in the
open population (OP) and in the National Park of Cabrera (NPC). ............................ 84
Contents
i. Abstract
ii. Resumen
iii. Acknowledgements – Agradecimientos – Agraïments
iv. List of tables
v. List of figures
vi. List of manuscripts published
1.1 Introduction
Humans have harvested fish from the wild since the origin of our species (Allendorf and
Hard, 2009; Stenseth and Dunlop, 2009). Today, marine ecosystems are experiencing
an accelerated loss of populations, and the current and future trends for global fisheries
remain controversial (Worm et al., 2006). Up to 63% of the assessed fish stocks
worldwide are overexploited and require rebuilding through reducing exploitation rates
(Worm et al., 2009). However, the solution for restoring fisheries is neither easy nor
Overexploitation may imply not only fishing-mortality rates exceeding the maximum
sustainable yield (Worm et al., 2006) but also unbalanced harvesting (Jørgensen et al.,
2007). The latter process can constrain the potential recovery rates of exploited
populations (Garcia et al., 2012). Unbalanced harvesting means that fishing is almost
never random (Heino and Godo, 2002). Individuals of, for example, a certain size, sex
38 J Alós (PhD Thesis) Selection drivers of life-history traits in marine coastal fishes
or behaviour are more likely to be removed from the population (Jørgensen et al., 2007).
This biased removal may result in genetic change if the expression of the selected
phenotype has some genetic basis (Allendorf et al., 2008). Therefore, detecting and
The basis of natural or fishing-induced selection is the same: there must be some
and such a phenotypic variability must be, at least in part, heritable (Allendorf et al.,
selection differential (i.e., fish displaying some specific life-history traits will be more
However, despite the relevance of this topic due to the potential risk for fishing
sustainability, only a few studies have directly analysed the existence and consequences
al., 2009). The results of those studies support the hypothesis that fishing-induced
selection favours individuals with smaller body size (Jørgensen et al., 2009). It is even
plausible that fishing-induced evolution could cause a more complex pattern favouring
smaller fish with reduced growth rates and increased reproductive investment that
mature sexually at a younger age and smaller size (Hutchings, 1993; Matsumura et al.,
2011; Rijnsdorp, 1993). While such traits may provide a benefit to individuals and
reduce their exposure to fishing gear, they may penalise fitness at the (wild) population
level in a process called maladaptive evolution (Olsen and Moland, 2011). Fishing-
Chapter 1 39
induced and natural selection interplay in this scenario, and such interplay will
Any fishing gear is size-selective per se (Heino and Godo, 2002). In consequence, it
is commonly accepted that fishing should favour the survival of individuals exhibiting
lower growth rates and smaller adult size (Conover and Munch, 2002). Indeed, some
morhua (Pérez-Rodríguez et al., 2009; Sinclair et al., 2002; Swain et al., 2007), and
in Menidia menida revealed that size-selective mortality may favour slow-growing fish
(Conover and Munch, 2002). However, most of the studies of fishing-related selection
more complex: fishing-related selection might operate on a wide range of traits, either
positively or negatively and co-varying with vulnerability to fishing. This relation could
be the case of recreational fisheries, where in addition to the existence of a bias for
harvesting the larger individuals (Lewin et al., 2006), fish must actively interact with the
fishing gears (Uusi-Heikkilä et al., 2008). Given this fact, it should be expected that the
fish vulnerable to fishing would be those with not only faster growth but also bolder
behaviour (Uusi-Heikkilä et al., 2008). However, the links among life history,
40 J Alós (PhD Thesis) Selection drivers of life-history traits in marine coastal fishes
physiological and behavioural traits can generate unexpected selection patterns, and the
direction of the selection differentials is an open (and hot) topic (Cooke et al., 2007).
Literature about this topic is still scarce and does not show a clear pattern of the
such as (Saura et al., 2010) reported a decline in body length and weight per generation
(a decrease in the growth rate) because of recreational fishing pressure in the Atlantic
salmon, Salmo salar. On the other hand, a line of fish more vulnerable to fishing
exhibited a lower growth rate after only three generations of artificial selection for either
2009). The theoretical framework justifying such a pattern is that vulnerable fish seem
to display a more accelerated metabolic rate, the energetic cost of which is compensated
by greater energy intake through an increased feeding rate (Redpath et al., 2009;
Redpath et al., 2010). Thus, the results reported for recreational fishing are
contradictory and cast doubt on the a priori expectation that more-vulnerable fish
Indeed, (Matsumura et al., 2011) showed that selection differentials on the growth
rate of a recreationally exploited population of pike (Esox lucius) might either be positive
or negative depending on the management strategy adopted. The adult body size was
depending on which size classes of fish experienced the highest mortality. In the
predicts selection against individuals with faster growth rates. At the same time, fish
with a larger size of maturation and smaller reproductive investment were selected by
Chapter 1 41
fishing. The fishing outcomes may be the result of a multi-trait correlation (Mollet et
al., 2010), including a trade-off between growth and reproduction (Roff, 1992), that
Therefore, there is a need for more detailed studies to better understand whether
recreational fishing constitutes a non-random selection process with respect to key life-
history traits (Audzijonyte et al., 2013). In the case of non-random fisheries, the
putative fishing-induced selective drivers should be qualified and quantified, and their
potential ecological and evolutionary effects should be evaluated (Kuparinen and Merilä,
2007). Then, balanced fishing that distributes mortality across the widest possible range
2012). This lack of information especially in marine costal species is the strategic
The main objective of this PhD Thesis was to analyse the plausibility and consequences
in the Mediterranean. A marine coastal species, Serranus scriba (Linnaeus, 1758), was
selected as a case study because this species is highly exploited by the recreational fishery
in the Mediterranean. As in many cases, the variability of the life-history traits of the
wild populations of this species with low interest for commercial fisheries is poorly
known. Thus, the first sub-objective was to accurately describe the variability in the
species’ growth and reproductive potential. The second sub-objective was to explore the
42 J Alós (PhD Thesis) Selection drivers of life-history traits in marine coastal fishes
different sources of recreational fishing mortality of S. scriba. The study of fishing effects
was extended to estimate sources of fishing mortality, such as post-release mortality, and
to provide management tools to mitigate the negative effects of fishing. The third sub-
objective was to test the hypothesis that fishing can be selective for some specific life-
history traits independently of fish size and to identify how different wild populations
respond to these selective forces when gene low is limited. The fourth sub-objective was
to test the hypothesis that behaviour could be a fishing-induced selection driver as well.
Finally, the implications of the results for better management (i.e., aimed at enhancing
sustainable fisheries and avoiding plausible maladaptive effects of fishing) are discussed.
This PhD thesis is structured in 10 chapters. The contents and structure of the chapters
Chapter 1 introduces the state of the art, including an outline of the topic, a general
description of the problem and its magnitude, and a review of the most important
references. This chapter also lists the main objectives and the hypothesis of this PhD
Thesis
microscopy histological techniques. Second, it shows the variability and the main factors
Chapter 4 review the literature and provide evindences that recreational fishing is a
source of mortality on the Posidonia oceanica fish community with, especial emphasize
on S. scriba. This chapter also shows possible benefits of management trough partial
(minimum legal size) or voluntary release of S. scriba made by recreational anglers. This
chapter identifies the most important post-release mortality factors that affect survival
of S. scriba.
Following the results obtained in Chapter 5, the Chapters 6 and 7 suggest science-
voluntary release.
terms of life history traits independently of fish size. Also, this chapter demonstrated
how the matching population’s genetic connectivity and the selective forces, the optimal
Chapter 9 shows the results of a simulation analysis sugesting how behaviour may be
home range behaviour and empirical data on between-fish variability of such behaviour
was used to test if fishing can be selective for some movement charcateristic. Results
The references cited throughout this PhD Thesis are included at the end followed by
Alós, J., Palmer, M., Balle, S., Grau, A. M., and Morales-Nin, B.
2010. Individual growth pattern and variability in Serranus scriba:
a Bayesian analysis. ICES Journal of Marine Science, 67: 502-
512.
46 J Alós (PhD Thesis) Selection drivers of life-history traits in marine coastal fishes
reproductive potential
Protected Areas
Alós, J., Palmer, M., Grau, A. M., and Deudero, S. 2008. Effects of
hook size and barbless hooks on hooking injury, catch per unit
899-905.
51 J Alós (PhD Thesis) Selection drivers of life-history traits in marine coastal fishes
Alós, J., Arlinghaus, R., Palmer, M., March, D., and Alvarez, I.
277.
52 J Alós (PhD Thesis) Selection drivers of life-history traits in marine coastal fishes
whenever gene flow is low. Following this argument one would expect characteristic
scales. We first show that recreational fishing indeed preferentially captures fish with
low reproductive investment and large adult size. Secondly, using oceanographic particle
isolated. We finally found fish life histories in exploited sites to be substantially different
small adult size were much more prevalent in exploited compared to unexploited sites
changes life histories also in open marine systems at small geographic scales. A possible
fisheries, even for small bodied, geographically restricted fish that are a targeted by
anglers mainly.
8.1 Introduction
When fishing exploits a naturally reproducing fish stock, exploitation is almost never
random. Indeed humans selectively target certain species (e.g., top predators) and
specific phenotypic traits and underlying genotypes within species (e.g., larger sized
fish) (Law, 2000; Jørgensen et al., 2007; Allendorf and Hard, 2009; Laugen et al.,
2012). Elevated and/or non-random harvesting can generate selection on certain traits
controversially debated for many stocks (Browman et al., 2008; Jørgensen et al., 2008).
(FIE) should select for “fast life-histories” characterized by small size and age at
maturation and high reproductive investment, which should collectively reduce adult
body size (Jørgensen et al., 2007; Law, 2000) and elevate adult natural mortality
The potential for FIE happens has been mainly discussed in the context of
Sharpe and Hendry, 2009). More complex exploitation patterns with respect to traits
selective by fishing are conceivable for passive fishing gears such as trapping or
addition to directly or indirectly correlated life-history traits (Alós et al., 2012; Cooke et
al., 2009; Cooke et al., 2007; Redpath et al., 2009; Redpath et al., 2010; Wilson et al.,
2011; Sutter et al., in press). The resulting complexity of selection pressures on a range
of traits suggests that selection differentials are not necessarily to be expected to have
the expected sign. For example, it has often been found intuitive to think of selection on
body size in fishing context (Conover and Munch, 2002). Indeed, in recreationally
exploited Atlantic salmon and Chinook salmon, negative selection differentials on body
size were reported (Saura et al., 2010; Kendall and Quinn, 2011). By contrast, (Redpath
et al., 2009) found that largemouth bass selectively captured by anglers were smaller
than those surviving exploitation, likely because food limitation met with a correlation
analyses that represent local fishing conditions and patterns are needed. To our
55 J Alós (PhD Thesis) Selection drivers of life-history traits in marine coastal fishes
knowledge, no study on recreationally exploited fish stocks exists that has attempted to
To support the hypothesis of FIE two not mutually exclusive conditions have to be
met. First, any phenotypic changes has to be due to fisheries, and second, at least part of
the phenotypic change has to have a genetic basis (Kuparinen and Merilä, 2007). A
range of approaches have been put forward to study FIE in these two dimensions. First,
theoretical modelling of FIE (e.g., (Dunlop et al., 2009; Matsumura et al., 2011) has
shown that fishing exploitation can be strong enough to cause selection differentials and
wild are limited, and models will also never conclusively answer whether evolution has
truly happened in nature (Audzijonyte et al., 2013). Second, many observational studies
using time series of phenotypic data from the wild have been conducted to study
evidence for FIE (e.g., (Rijnsdorp, 1993; Swain et al., 2007). The main issue of this
induced plastic responses on phenotypes have been developed (e.g., the popular
Clearly, observational studies cannot discount conclusively the potential for non-fishing
factors to affect phenotypic change (Audzijonyte et al., 2013), and usually such studies
also lack the molecular tools needed to study genetic changes caused by fishing. There
are, however, some few observational studies that have used molecular techniques to
study historical samples from exploited stocks, which suggest genetic change has taken
56 J Alós (PhD Thesis) Selection drivers of life-history traits in marine coastal fishes
place (Ãrnason et al., 2009; Jakobsdóttir et al., 2011; Pukk et al., 2013). The third and
final popular approach to the study of FIE has been experimental in the laboratory or in
experimental facilities such as ponds (e.g.,(Conover and Munch, 2002; Philipp et al.,
2009). The strength of these studies is that they can provide cause-and-effect evidence
and that phenotypic change has a genetic basis (e.g., through common-garden
experiments) (Conover and Baumann, 2009), but the inference to wild conditions is
highly difficult.
A final approach that joins many of the benefits outlined in the three approaches
above is a comparative field approach that studies phenotypes of fish striving in similar
(Bevacqua et al., 2012; Drake et al., 1997). Whenever there is no contemporary natural
gene flow among sub-populations, differential fishing slection should generate sub-
populations that adapt their life-histories to the local selective pressures (Hutchings,
1993; Reznick et al., 1990). Some comparative field approaches has some history in
freshwater systems, where spatial segregation and limited natural gene flow (Haugen
and Vøllestad, 2001; Drake et al., 1997). However, meta-populations with historically
connected fish species are increasingly identified in the open ocean and marine systems
(Mora and Sale, 2002), which constitutes a good opportunity to study evolutionary
environment has been traditionally assumed that are open and operate as genetically
open systems (Roberts, 1997), recent development matching genetics and oceanography
suggests that marine fish populations are not as open as expected (Palumbi and Warner,
al., 2005; Taylor and Hellberg, 2003). Small-scale meta-populations in the marine
environment would render a field approach useful to provide evidence of FIE change in
the wild (Pukk et al., 2013). The Mediterranean Sea offers a suitable model system for
population’s connectivity because oceanic fronts and local hydrodynamic conditions can
et al., 2011). Physical processes can induce an increase of local self-recruitment and
increase the vulnerability of local populations to human impacts such as fishing (Galarza
et al., 2009). Therefore, the local depletion of adult individuals due to fishing activity
immature growth rate) and high resolution hydrodynamic modelling to test if between-
historic fishing pressure (from intense harvesting to no-take) combined with the results
from a high resolution numerical model that allowed estimating the connectivity of the
studied fish populations. Our hypotheses was that historic recreational fishing pressure
has led to life-history adaptations towards “fast life histories” in a small marine fish with
for phenotypic change in an open marine environment, at least three lines of evidence
have to be accumulated: i) one needs to show that the particular gear under
maturation), ii) one has to provide evidence of restricted gene flow among local
populations and iii) one has to test the predicted changes in phenotypes among stocks
drivers of change as far as possible. We have compiled all three lines of evidence using a
Serranus scriba (Figure 8.1), is a small-sized Serranid that inhabits shallow seagrass
achieves sexual maturity during its first or second year (Alonso-Fernández et al., 2011).
It is characterized by daily-batch egg releases (with peak spawning season in May and
fact, the species is among the most intensively harvested (both in terms of numerical
abundance and biomass yield) by the small-scale recreational boat anglers in the NW
The first question to be answered was whether recreational angling is selective for life-
history traits such as annual reproduction investment, theoretical maximum size, age of
maturation and immature growth rate. Our empirical approach was based in exploring
experimental beam trawl) and the dominant fishing gear used in the area (passively
(average of the movement area used by S. scriba, (March et al., 2010)) located at the
south of Mallorca Island (Figure 8.1). During May (peak of the spawning season),
individuals of S. scriba from this population were sampled using either the experimental
beam trawl (active method) or hook-and-line (passive method) at the identical within-
We conducted three different fishing hauls using the experimental beam trawl (see
details of the method in (Deudero et al., 2008) to obtain a large enough sample (n = 50).
were done following protocols described in Chapter 7 of this PhD Thesis. All
individuals were processed fresh, measured (total length, mm), weighted (total weight,
g), and their sagitta otoliths were dissected for estimation of the individual life-history
traits using a function-based assessment approach that infers the traits from an
60 J Alós (PhD Thesis) Selection drivers of life-history traits in marine coastal fishes
individual growth curve (see for details below). Additionally, the gonads of a sub-sample
for each sampling method (n = 54) were used for direct measurement of reproduction
Figure 8.1 Picture of Serranus scriba (Family: Serranidae) (top left panel). Map locating the Mallorca
Island in the Balearic Sea (NW Mediterranean) (bottom left panel).The spatial location of the 25 sites of
eggs releasing is showed in the right panel highlighting the high exploited (recreational fishing) area
located in Palma Bay and the waters of National Park of Cabrera where recreational fishing is not allowed
(No-take MPA). Black-white gradient represents to be the spatial distribution of the recreational fishing
effort in the Mallorca Island proyected in a raster of 250 m x 250 m of (n = 1,430). Recreational anglers
were censed by the coastal guards (data obtained in a work-package of the Project CONFLICT).
After identifying the direction of possible selection operating on life-history traits, sub-
populations of S. scriba were identified that should show adaptations in such traits due
different historic fishing intensity and have limited gene flow among each other. It is
under these conditions that distinct life history adaptations should be expected. We thus
61 J Alós (PhD Thesis) Selection drivers of life-history traits in marine coastal fishes
selected the sub-populations of S. scriba in the present study following two criteria: i)
limited gene flow and ii) contrasting historical and contemporary harvesting pressures.
We first explored the gene flow approximated by the population’s connectivity and
harvesting pressure (old no-takes marine protected areas, MPA, and a highly exploited
area, see below) to test whether life-history changes in life-histories have taken place.
Based on life-history theory and the results of the potential selection pressures caused by
angling from section 8.2.2, we predicted fish subjected to high harvesting pressure to
have evolved smaller maturation age and size, higher reproductive investment and
Similar to many other coastal fish inhabiting seagrass meadows, early life-stages of S.
scriba are pelagic with dispersal characteristics and gene flow linked to the dominant
coastal flow patterns during the spawning season. To estimate the degree of the sub-
potentially inhabited by adults of S. scriba (any seagrass or rocky bottoms with < 30 m
depth) along the inner-shelf region of the SE coast of Mallorca (Figure 8.1). The self-
recruitment and the direct and indirect connectivity of each sub-population of S. scriba
were calculated following the procedures of (Basterretxea et al., 2012). Briefly, the
Lagrangian trajectories (Watson et al., 2011) of weekly releases of passive tracers (virtual
eggs) during the peak reproductive season were numerically simulated using a high
The flow fields produced by surface wind forcing were obtained from the 12-hourly
wind maps from an historical data-base of ten years (2000-2009, data from the coastal
http://www.aemet.es/).
The pelagic larval duration (PLD) was assumed to be 28 days (Macpherson and
Raventos, 2006) and the floatability of the eggs was assumed to be positive following
the results obtained in the experiment provided in Appendix III. The virtual eggs were
homogeneously distributed in each area, and a reflective boundary condition was used to
prevent particles from moving onto land. We assumed individual larvae to have been
recruited to a particular area if they were found in the inner-shore habitat (defined by
each area) at the end of the PLD simulation. Degree of self-recruitment (mean and s.d.)
was defined as the number of particles remaining in area j at the end of the prescribed
PLD period divided by the numbers of particles initially released in area j per each
The probability that a particle is transported from one area to another one by the end
of the PLD (28 days) was considered the direct connectivity. Direct connectivity
dispersal from and to other areas during one hatching cycle. In this sense, it is indicative
variation can also be exchanged through indirect transport involving several generations.
The indirect connectivity reflects the probability of this transport across generations
(Casabianca et al., 2011) and is dependent on the existence of suitable habitat corridors
63 J Alós (PhD Thesis) Selection drivers of life-history traits in marine coastal fishes
that allow the survival of intermediate populations between the source and the receiving
population. Indirect connectivity (IC) between paired populations was calculated as:
N
IC DC n
n 1 (1),
where N is the number of hatching cycles, DC identifies the direct routes and DCn
includes all the routes requiring n-1 steps (or n direct routes). It is important to note
that indirect connectivity conveys a temporal term that provides information on the
velocity of the exchange. In the case of phenotypic variations this may be relevant
because longer routes of exchange, involving a higher number of generations, may imply
of the early life-stages of S. scriba were dictated by the coastal morphology at the spatial-
scale studied. Two main areas, the inner part of Palma Bay (IPB) and the National Park
of Cabrera (NPC) were markedly different from the others showing the highest
population (OP, Figure 8.2), the final position of the virtual eggs released suggested a
notorious high degree of retention of eggs in these two main areas (Figure 8.2). Direct
connectivity between these two populations (IPB and NPC) areas was low (Figure 8.3),
indicating low potential gene flow. These two areas also showed low degree of direct
connectivity with the OP (Figure 8.3). When longer term dispersal was analyzed
(indirect connectivity based in 50 years) the effect of along shelf connections between
the IPB and NPC remained low (Figure 8.3). Therefore, while the populations in OP
64 J Alós (PhD Thesis) Selection drivers of life-history traits in marine coastal fishes
were considered to have certain degree of heritable exchange, IPC and NPC were
the potential for life-history change due to fishing in IPC with NPC serving as a
control.
Apart of the limited gene flow of both NPC and IPB, these sub-populations were
unique because they were the only ones exposed to the minimum and maximum
harvesting selection pressure, rendering them an ideal and pretty unique case-study
candidates to test our hypothesis. The NPC was declared a sanctuary (no-take MPA) in
1991. It is formed by 19 small Islands and is one of the largest marine protected areas of
the Mediterranean Sea (Francour et al., 2001). Since recreational fisheries was
S. scriba notably increased its abundance (e.g., Epinephelus marginatus, (Reñones et al.,
1999). By contrast, the second area IPB (South of Mallorca Island) is the most
Studies on FIE depend on assessment of individual traits. Many life-history traits such
directly observed or measured on captured fish. Therefore, many studies on FIE have
relied on inferring life-history traits from hard structures (e.g., (Swain et al., 2007). The
back-calculation of length-at-age using growth marks contained in the otoliths can offer
a reliable method to obtain repeated measures over the life-span of the same individual
65 J Alós (PhD Thesis) Selection drivers of life-history traits in marine coastal fishes
when there is a strong relationship between fish and otolith size as is often the case
(Mollet et al., 2010; Pilling et al., 2002; Brunel et al., 2012). We chose a function-valued
approach (Stinchcombe and Kirkpatrick, 2012) to infer key life-history traits from
individual growth curves. In this approach, parameters (traits) estimated from individual
growth curves were used as data characterizing individual fish. As far as we are aware,
We estimated individual life-history strategies in the NPC, IPB and the OP sub-
populations to test our prediction that fish in the NPC should be characterized by
“slow” life-histories compared to fish in IPB (the exploited area). Samples of adult
individuals of S. scriba were obtained from each study area: IPB (n = 201), OP (n = 215)
and NPC (n = 353). Fish sampling was carried out with the same gears (conventional
depths. All the individuals were processed as described in section 8.2.2 and the gonads
from sub-sampled individuals from May and June (n = 53 from the IPB, n = 41 from
the OP and n = 79 from the NPC) were used for direct measurement of the
abundance (catch per unit effort as index) and the size and age of vulnerable fish were
taken using highly standardized fishing sessions with conventional hook-and-line gear.
Fishing sessions (IPB n = 54, AP n = 24 and NPC n = 64) were realized using the
standardized recreational angling gear described in (Alós et al., 2009) visiting each sub-
population on randomly selected days during a year period. Briefly, two anglers
(accompanied by a researcher) fished the same time with the same gear (hook size)
66 J Alós (PhD Thesis) Selection drivers of life-history traits in marine coastal fishes
using the same effort (30 min) using two different baits (worm and shrimp). At the end
of each fishing session the fish were identified and measured (fish sizes: IPB n = 61, OP
n =40 and NPC n = 202). The otoliths of a random-sample of the individuals were
processed as described below for aging purposes (IPB n = 61, OP n = 27 and NPC n =
179).
We fitted each individual back-calculated length-at-age data from otoliths to the bi-
phasic growth model proposed by (Lester et al., 2004) to provide indirect measures of
the annual reproduction investment (g), individual maximum theoretical size (L∞), age
of initiation of maturation (T) and immature growth rate (h) (Arlinghaus et al., 2009;
Matsumura et al., 2011). The model assumes linear growth in the juvenile phase and a
trade-off between the energy allocation to somatic growth and reproduction in adult
ages (Lester et al., 2004). The model by (Lester et al., 2004) is a special case of a more
general version published by (Quince et al., 2008a; Quince et al., 2008b) and is valid for
Chapter 3 of this Thesis) and bi-phasic growth pattern (as detected in S. scriba in
Chapter 2). Somatic growth rate before the age of the onset of maturation (T, years) in
L t h (t t 1 ) when t ≤ T (2),
where Lt is the length at age t (mm), h is the immature growth (mm year-1), t1 is the
When the individual takes the “decision” to start investing into reproduction at age
T, the somatic growth of the individual is represented by the more classical von
Bertalanffy (VB) growth equation with parameters that provide explicit information on
Lt L 1 e k t t 0 when t ≥ T (3),
where L∞ = 3h/g, k = ln(1 + g/3) and to = T + (ln(1 - g(T - t1)/3)/ln(1+g/3), and ε is the
averaged over the entire reproductive cycle (g) (see also (Charnov, 2008), L∞ (maximum
theoretical body size) is the ratio of net production to reproductive investment (L∞ =
3h/g) and t0 in the VB growth model is another simple function of T and g (Lester et al.,
2004).
The growth model was fitted using a Bayesian approach for each individual. This
approach has several advantages for inferring parameters of complex models (Ellison,
2004) and has become popular to estimate individual growth parameters (Helser and
Lai, 2004). Two different models were fitted. The first model was applied to the data of
either beam or hook-captured fish to estimate the type of selection on life-history traits
68 J Alós (PhD Thesis) Selection drivers of life-history traits in marine coastal fishes
model was fit to the individual data of the three study populations to infer life-history
traits of fish in the three sites (IPB vs. OP vs. NPC). The model was implemented and
run using the runjags library of the R package (http://www.r-project.org/), which opens
age 5 or older at capture, which improves the accuracy of the method substantially (Alós
et al., 2010). Moreover, due the over-dispersed representation of older ages in the
unexploited NPC site in the second model, 50 individuals were randomly selected. By
this approach, the ages and the number of observations per individual included in the
analysis were not different among sites in fitting of the first (Chi-squared independence
test, p = 0.46) and second model (Chi-squared independence test, p = 0.1). Therefore,
any significant variation in life-history traits among gears or sites was independent of
the fish size and the number of samples (ages) per fish including in the fitting. A
knowledge was used and is fully provided in Appendix IV. Three Monte Carlo Markov
Chains (MCMC) were run using randomly chosen initial values for the life-history
traits and After accepting convergence of the three chains, assessed using Gelman-
Rubin diagnostic (Plummer et al., 2006), the number of valid iterations after burning
and thinning was 1,000. The feasibility of the Bayesian framework adopted here was
comparing the distribution of the individual Bayesian means of each life-history trait for
the two sampling methods beam trawl and hook-and-line to test whether angling would
69 J Alós (PhD Thesis) Selection drivers of life-history traits in marine coastal fishes
population comparisons in average life-history traits were carried out by comparing the
Bayesian population’s means of each life-history traits using the Bayesian Credibility
Intervals (BCI) (2.5%, 50%, and 97.5% overlapping). Unlike the frequentist’s p value,
the Bayesian posterior distributions are interpreted correctly as one’s belief that there is
a p% probability that the parameter of interest lies within the interval (Ellison, 2004).
the BCI did not overlap at all. L∞ and h were expressed in mm as the distance from the
otolith centre to the border following the growth path. However, in order to facilitate
interpretation, in some cases the scale was translated to fish size (total length) using the
abundance, age and size of vulnerable fish sampled by experimental angling were
analysed using frequentist statistics using Generalized Lineal Mixed Effects Models
(GLMM, (Zuur et al., 2009). Minimum adequate GLMMs were fitted following a
forward step-by-step (by comparing the model with and without the factor through
ANOVA) until maximum explanatory power was reached (the AIC criterion) (Zuur et
al., 2009). The p values for each parameter were estimated through MCMC simulations
using the function pvals.fnc from the library languageR of the R package.
70 J Alós (PhD Thesis) Selection drivers of life-history traits in marine coastal fishes
Figure 8.2 Self-recruitment (10 years mean and s.d.) of the 25 sites of eggs release considered in this
study (upper panel). The highest values observed in the inner part of Palma Bay (sites 6 and 7) and the
National Park of Cabrera (sites 14, 15 and 16) were showed in dark grey and black respectively. An
average, in terms of SC, population (sites 9 and 10) is showed in light grey. The bottom panels shows the
spatial-plots of a fixed kernel probability distributions (estimated in raster of 250 m x 250 m) of the
positions at the end of the PLD duration of the virtual eggs released in each of these three main areas.
To help sorting out whether FIE would be the most parsimonious explanation of the
observed life-history differences among the three sites investigated in the present study,
we also included some environmental data in our study. A 10 year record of satellite
chlorophyll (Chl-a) as measure of productivity was obtained for each of the three sites
included in the analyses and compared among them. In all cases (temperature and
8.3 Results
investment (g), immature growth (h) and age of maturation (T) were successfully
estimated for the experimental beam trawl (active gear) and hook-and-line samples
(passive gear) (Table 8-1). Mean L∞ was significantly different between the fish sampled
with the two gears (Table 8-1). Similarly, the average g of fish vulnerable to hook-and-
line were smaller than those captured in the trawl suggesting that removal of vulnerable
fish to angling would exert selection for high reproductive investment (Table 8-1).
older age of maturation and smaller immature growth in the hook-and-line individuals
compared to fish vulnerable to trawls, but in both cases the Bayesian credibility intervals
overlapped notably suggesting smaller selection pressures on these traits (Table 8-1).
Figure 8.4 shows a box-plot of the individual values of life-history traits estimated for
the two fishing treatments. Overall, the results suggested a specific direction of
reproductive investment and smaller adult growth capacity under conditions of intensive
recreational harvesting.
in the line of those obtained for the indirect measures of g just described. Accordingly,
there were significant differences between the beam trawl and hook-and-line (GLMM;
p <0.05, Table 8-2). Individual’s sampled using hook-and-line invested less into
72 J Alós (PhD Thesis) Selection drivers of life-history traits in marine coastal fishes
batch fecundity and g estimated from the growth curve was highly significant (GLM, p
< 0.01).
Figure 8.3 Directional flow diagram showing the paired direct and indirect connectivity (black arrows)
calculated among the inner part of Palma Bay (PB), the open population (OP) and the National Park of
Cabrera (NPC) (each number can be interpreted as a % of eggs released in an specific sub-populations).
Indirect connectivity values are the maximum values of connectivity over 50 years. The grey arrows show
the connectivity attributed by other sub-populations. 360º black arrows are the self-recruitment values for
each specific sub-population.
The individual values of g, L∞, T and h were also successfully estimated for the
individuals sampled in the three sub-populations studied (IPB, NPC and OP). There
0.75 years-1) and the NPC (Bayesian mean = 0.61 years-1). Thus, we accepted the
hypothesis of higher reproductive investment in the exploited site IPB relative to the
unexploited site NPC (Table 8-3 and Figure 8.5). In contrast, the posterior distribution
of the open population OP had intermediate values (Bayesian mean = 0.70 years-1)
notably overlapping with the distributions of the other two populations. Results were
similar for L∞, and differences between the Bayesian means of IPB (Bayesian mean =
228 mm of fish total length) and NPC (Bayesian mean = 244.7 mm of fish total length)
were significant, indicating lower final size in fish living in the exploited site IPB (Table
8-3 and Figure 8.5). In the case of T and h, the posterior distributions of the three
4.5 0.9
g (years‐1)
4.0 0.8
L∞ (mm)
3.5 0.7
3.0 0.6
1.7 1.2
1.6
T (years)
1.1
h (mm)
1.5
1.4 1.0
1.3 0.9
1.2
0.8
BT HL BT HL
Figure 8.4 Box-plot of the Bayesian individual means of the life-history parameters (reproduction
investment, infinite size, age of maturation and immature growth) estimated for the beam trawl (BT in
light grey) and hook-and-line (HL in dark grey) individuals.
74 J Alós (PhD Thesis) Selection drivers of life-history traits in marine coastal fishes
Individuals sampled in the IPB (high exploited population) also had a significant
higher batch-fecundity than those the individuals sampled in the NPC (GLMM; p
<0.05, Table 8-2). A summary of the GLMMs performed to explore differences in the
population means of relative abundance, fish sizes and ages of vulnerable fish is shown
in Table 8-4, which revealed significant effects in all the response variables. The
abundance, and the fish were on average smaller and younger as is typical in exploited
sites. By contrast, vulnerable individuals sampled in the NPC were more abundant,
larger and older, and the fish in the OP site showed average values (Table 8-4). Daily
temperature oscillated in the same way both at a daily and seasonal basis in the IPB and
close proximity between the two areas (Figure 8.6). By contrast, chlorophyll-a
concentrations estimated from the sea-colour images available for the IPB and NPC
showed in both cases a clear seasonal periodicity, and the IPB had higher values
suggesting being a more productive site than the NPC (Figure 8.6). Therefore, one
would have expected larger growth rates in IPB fish, but the opposite was found
Table 8-1 Bayesian posterior distribution (MCMC) of means the life-history traits (reproduction
investment in year -1, infinite size inn mm of otolith, age of maturation in years and immature growth rate
referred to otolith scale in mm year -1) for the beam trawl and the hook-and-line samples.
Beam trawl Hook-and-line
Parameter Mean s.d. 2.5% Median 97.5% Mean s.d. 2.5% Median 97.5%
Reproduction investment 0.88 0.12 0.75 0.86 1.11 0.74 0.06 0.68 0.73 0.81
Infinite size 3.50 0.11 3.28 3.50 3.70 3.84 0.07 3.72 3.84 3.95
Age of maturation 1.33 0.08 1.17 1.33 1.45 1.43 0.05 1.35 1.43 1.49
Immature growth 1.03 0.11 0.90 1.01 1.24 0.94 0.05 0.89 0.93 1.01
75 J Alós (PhD Thesis) Selection drivers of life-history traits in marine coastal fishes
8.4 Discussion
reproductive investment and small adult size in the small coastal fish S. scriba
constituted the most parsimonious explanation of the observed phenotypic data. Four
lines of evidence support this conclusion. We have first shown that recreational angling
selects for certain life-histories, i.e., those with high reproductive investment and small
terminal size. We have secondly shown that oceanographic currents and local
hydrodynamics prevented gene flow among spatially closed sites. Therefore, two
ingredients of FIE of life histories in the marine environment were met. Accordingly,
directional changes expected from the theoretical selection pressures exerted by anglers.
Finally, the smaller adult growth and larger reproductive investment of fish surviving
the exploitation in high intensity sites could not be explained by envrioenmatlel relates
ecosystems (Drake et al., 1997; Haugen and Vøllestad, 2001; Magnan et al., 2005) that
harvesting can result in FIE of fast life-histories characterized by early maturation, high
investment into reproduction and small adult growth when gene flow is limited at small
Table 8-2 Results of the two Generalized Lineal Mixed effect models (GLMMs) fitted to test the
relationship between the direct measure of reproduction investment (batch fecundity) and (A) the
sampling method (beam trawl and hook-and-line), and (B) the populations (inner of Palma Bay, average
population and National Park of Cabrera). In both models Fish size was also included as fixed factor and
Fishing ID as random factor. The GLMM developed for populations also included the temporal variable
month. The table shows the parameters include in the final model (the MCMC mean of the parameters,
the lower and upper highest 95% credibility intervals (HDP) and the significance of the parameter.
Interactions were not significant and were not included.
Log (batch fecundity) MCMC HPD 95%
Parameter mean lower upper P- value
Selection experiment
Intercept 5.83 5.00 6.63 <0.001
Fish size 0.02 0.01 0.02 <0.001
Method (hook-and-line) -1.31 -1.93 -0.68 <0.05
Populations comparisons
Intercept 5.21 4.67 5.75 <0.001
Fish size 0.02 0.02 0.02 <0.001
Population (inner of Palma Bay) 0.74 0.42 1.08 <0.05
Population (average population) -0.08 -0.38 0.22 0.87
Month (may) -1.04 -1.30 -0.77 <0.001
selection that proposed selection for high reproductive investment and declines in adult
body size of Northen pike (Arlinghaus et al., 2009), and with the empirical findings on
recreationally exploited Atlantic salmon (Saura et al., 2010) and Chinook salmon,
(Kendall and Quinn, 2011). Because it is likely that the life-history of a fish is correlated
likely that the fish surviving exploitation are also characterized by higher shyness and
less aggressive foraging (Biro and Post, 2008; Sutter et al., 2012). Because the selection
found in our work is expected to drive populations of S. scriba to evolve slower capacity
to growth after maturation due to higher reproductive investment and because the
77 J Alós (PhD Thesis) Selection drivers of life-history traits in marine coastal fishes
adapted individuals are expected to also become harder to catch (Philipp et al., 2009) the
reproductive fitness and catchability negatively (Sutter et al., 2012; Johnson et al.,
natural environments such as the National Park of Cabrera will drive population in the
opposite direction favouring individuals with large expected life-span to avoid gape-
limited predation and with low reproductive investment due to the trade off with post
maturation growth and to postpone the survival cost of reproduction (Hutchings, 1993;
Reznick, 1982; Aikio et al., 2013). In particular, in environments where the abundance
directional selection on fast (juvenile and adult) growth is to be expected (Edeline et al.,
2007). Therefore, the optimal life-history strategy should favour a version of “bigger-is-
better” which is characterized by fast early growth, late maturation and moderate to
small annual reproductive investment (Edeline et al., 2007; Hutchings, 1993; Olsen and
Moland, 2011; Reznick, 1982). This is because the (surviving) individual theoretically
would maximize the fitness over a larger the life-span under natural conditions
Table 8-3 Posterior distribution (MCMC populations means, s.d. and Bayesian credibility intervals) of
the life-history traits (reproduction investment in year -1, infinite size (mm of otlith), age of maturation in
years and immature growth rate referred to otolith scale in mm year -1) estimated for the three analysed
populations (inner of Palma Bay, average population and National Park of Cabrera).
By contrast and in line with our work, heavy exploitation by anglers would expect to
reproductive investment, which results in penalties on adult growth. While these patters
were supported in our work in relation to reproductive investment and adult growth, no
change in maturation timing was found. However, given that maturation happens in S.
criba usually at age 1 (Alonso-Fernández et al., 2011) there was no room for maturation
evolution in this species. This constraint also likely explains the tendency for exploited
fish to growth fast early in life because it pays off to be as large as possible when first
reproduction starts and investment into the future (by growing to larger sizes) does not
79 J Alós (PhD Thesis) Selection drivers of life-history traits in marine coastal fishes
pay off. The same was found in a theoretical model by (Matsumura et al., 2011) in
recreationally exploited northern pike, Exos lucius. When size selectivity favoured heavy
cropping of very young fish already, selection pressures on fast early immature growth
growth when size-selectivity only targeted large mature fishes, e.g., due to a large
4.4 0.9
4.2 0.8
g (years‐
4
L∞ (mm)
0.7
3.8
3.6 0.6
3.4 0.5
3.2 0.4
1.8 1.1
1.7 1
T (years)
h (mm)
1.6 0.9
1.5
1.4 0.8
1.3 0.7
1.2 0.6
NPC I IPB NPC I IPB
Figura 8.5 Bayesian Credibility Intervals (2.5%, 50%, and 97.5%) of the posterior distribution of the
population’s means estimated for each LH trait to assess with the differences between-populations
One caveat of any comparative study such as the one performed here is to discount
any non-fishing related environmental drivers that might also explain the among-site
al., 2005; McDermid et al., 2010). While we cannot discount that the phenotypic
change may be entirely plastic, the bulk of evidences presented here makes this
80 J Alós (PhD Thesis) Selection drivers of life-history traits in marine coastal fishes
explanation unlikely. First of all, all life-history traits have some modest heritability and
the selection caused by recreational fishing was found pronounced, which should
generate selection differentials on heritable traits (Law, 2000). Secondly, the variation in
fishing pressure among sites was undisputed and the gene flow among the protected
area site and the exploited site was found very small. Thirdly, our control sites (OP)
Finally and although cold waters may slower pre-maturation growth and result in older
age of maturation and larger longevity in some species (McDermid et al., 2010; Wright
et al., 2011), we could discount temperature to vary substantially among our sites. The
only environmental driver that did vary among the high and no exploitation sites was
higher productivity during the peak of annual productivity in spring in the exploited
IPB. Greater resource availabilities should on the one hand increase relative fecundity
due to greater resource intake (e.g., (Craig and Kipling, 1983), which might explain the
greater annual reproduction investment found in the IPB sites. At the same time,
however, growth rate of both immature and mature should profit from higher
productivity in the high exploitation, and maximum size should then increase
(McDermid et al., 2010). Similarly, the reduced density of fish should additionally
elevate growth due to relaxed competition (Lorenzen and Enberg, 2002). By contrast,
our life-history traits in relation to growth directly showed the exact opposite response.
First, the immature growth rates (h) did not differ statistically among sites. Secondly,
the theoretical maximum size was significantly smaller in the high exploitation sites
81 J Alós (PhD Thesis) Selection drivers of life-history traits in marine coastal fishes
although the environmental plasticity hypothesis should have predicted larger maximum
sizes inter alia because relaxed intra-specific competition for prey should have increased
the food availability generating fast growth and small reproductive investment (Dunlop
et al., 2005). Therefore, we have no environmental factor that may explain the life-
history difference and thus have limited supports for a plasticity hypothesis, rendering
particular, the high heritability of the life-history traits studied here (Law, 2000), and
the limited genetic exchange among populations of very likely common ancestors makes
explanation.
Table 8-4 Results of the three Generalized Lineal Mixed effect models (GLMMs) fitted to test the
relationship between the relative abundance (fish*30min*angler), fish size (mm) and ages (years) of
vulnerable Serranus scriba sampled in the inner of Palma Bay, the average population and the National
Park of Cabrera. The full model (without reduction) includes the fixed factors population, depth (m),
angler, bait and month. The abundance GLMM have repeated measures within day and the size and age
were repeated measures of fishing sessions within day which were included as random effects. The table
82 J Alós (PhD Thesis) Selection drivers of life-history traits in marine coastal fishes
shows the parameters include in the final model (the MCMC mean of the parameters, the lower and
upper highest 95% credibility intervals (HDP) and the significance of the parameter.
MCMC HPD 95%
Parameter mean lower upper P- value
Log (Abundance + 1)
(Intercept) 1.35 0.86 1.87 <0.001
Population (inner of Palma Bay) -0.64 -1.00 -0.27 <0.01
Population (average population) -0.30 -0.77 0.16 0.200
Depth (m) -0.04 -0.06 -0.01 <0.05
Month (Jan) 0.43 0.03 0.81 0.082
Month (Feb) 0.12 -0.26 0.53 0.588
Month (Mar) 0.16 -0.30 0.61 0.570
Month (May) 0.31 -0.12 0.75 0.170
Month (Jun) 0.52 -0.02 1.03 0.076
Month (Jul) 1.16 0.49 1.84 <0.01
Month (Aug) 0.99 0.53 1.43 <0.001
Month (Oct) 0.75 0.00 1.57 0.073
Month (Nov) 0.91 0.15 1.69 <0.05
Log (Fish size)
(Intercept) 4.83 4.73 4.93 <0.001
Population (inner of Palma Bay) -0.17 -0.24 -0.10 <0.001
Population (average population) -0.10 -0.17 -0.03 <0.01
Bait (Shrimp) 0.08 0.04 0.13 <0.01
Depth (m) 0.01 0.00 0.02 <0.05
Log (Fish age + 1)
(Intercept) 1.33 1.10 1.54 <0.001
Population (inner of Palma Bay) -0.49 -0.62 -0.36 <0.001
Population (average population) -0.46 -0.62 -0.29 <0.001
Bait (Shrimp) 0.14 0.04 0.24 <0.05
Depth (m) 0.03 0.01 0.04 <0.01
Cause-and-effect evidence for evolutionary changes (i.e., genetic) in the wild can
Baumann, 2009; Enberg et al., 2012). Molecular ecological tools are rapidly emerging
but the link of genotypes to complex phenotypes is not straightforward (Ãrnason et al.,
2009; Jakobsdóttir et al., 2011; Pukk et al., 2013). In this context, comparative field
83 J Alós (PhD Thesis) Selection drivers of life-history traits in marine coastal fishes
studies such as ours may provide a useful compromise to study whether fishing
differentially targets certain phenotypes and whether populations with common ancestry
and low current gene flow differentiate in their average phenotype in directions expected
from theory and in line with selection differentials estimated in the wild. Often, the
large effective population size of marine fish has been proposed to constitute barriers to
FIE (Cuveliers et al., 2011; Pukk et al., 2013). We have shown, however, that meta-
populatoins of the small coastal species S. scriba inhabiting Mallorca Island develop
by high levels of local self-recruitment and low direct and indirect connectivity among
each other. Those findings are in line with recent literature indicating that contrary to
(Roberts, 1997), hydrodynamics and life-history may actually also result in fine meta-
population structures with limited gene flow in many marine areas (Cowen et al., 2006;
Mora and Sale, 2002; Schunter et al., 2011). This provides conditions for fisheries-
Figura 8.6 Chronograms of ten years of the daily surface temperature (ºC) and concentration of
chlorophyll-a (mg m-3) in the inner part of Palma Bay (PB), in the open population (OP) and in the
National Park of Cabrera (NPC).
change has a genotypic basis. Empirical evidence of FIE in our study species could be
raised and tested in the laboratory. For example, the offspring from the different
populations reared under identical environmental conditions could explain the origin of
the differences of S. scriba in the wild (Conover and Baumann, 2009). Until this
research becomes available, this Thesis proposes a new paradigm of the potential for
widespread FIE of small bodied at small scales in marine coastal fishes. Due the
productivity and catch per unit effort negatively (Sutter et al., 2012; Enberg et al., 2009),
fisheries scientist and mangers may adjust their management polices to prevent or
decrease the evolutionary impacts of harvesting for successful fish stock management.
85 J Alós (PhD Thesis) Selection drivers of life-history traits in marine coastal fishes
goal.
87 J Alós (PhD Thesis) Selection drivers of life-history traits in marine coastal fishes
One, 7: e48030.
Chapter 10 89
1. The individual is the optimal level of study understanding life-history traits such as
2. The study of the individual growth and reproduction revealed both population-level
patterns such as the mating behaviour, and individual-level patterns such as the broad
pattern.
4. Fishing mortality results not only from the direct extraction of biomass but also from
indirect morality related with fish captured and released but that fails to survive.
5. The fishing mortality induced by recreational fishing is not a random but a biased
selection differentials against phenotypes with higher growth capability and lower
J Alós (PhD Thesis) Selection drivers of life-history traits in marine coastal fishes 90
history.
6. The pelagic nature of the early life stages and its hydrodynamic-dependent dispersal
kilometres). This process can generate reproductively isolated populations with limited
gen flow.
fishing seems to be characterized by high reproductive investment and small adult size
concept of human-induced evolution, and it can play a key role in sedentary marine
research. Until this research becomes available, this PhD Thesis proposes a new
10. Due the potential negative effects of fisheries-induced evolution, which may affect
stock recovery and productivity, fisheries scientist and mangers should adjust
Reference list
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and Merilä, J. 2013. Optimal March, D., and Alvarez, I. 2009.
growth strategies under The influence of type of natural
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Journal of Fish Biology, 82: location in a mixed-species
318-331. marine recreational fishery, with
Alonso-Fernández, A., Alós, J., Grau, implications for management.
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Saborido-Rey, F. 2011. The Use Alós, J., Palmer, M., and Arlinghaus, R.
of Histological Techniques to 2012. Consistent selection
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Mediterranean Fishes Coris julis, encounters among human
Serranus scriba, and Diplodus predators and fish. PLoS ONE,
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Alonso-Fernández, A., Vallejo, A. C., M., and Morales-Nin, B. 2010.
Saborido-Rey, F., Murua, H., Individual growth pattern and
and Trippel, E. A. 2009. variability in Serranus scriba: a
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haddock (Melanogrammus Allendorf, F. W., England, P. R.,
aeglefinus) of Georges Bank: Luikart, G., Ritchie, P. A., and
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92 J Alós (PhD Thesis) Selection drivers of life-history traits in marine coastal fishes
List of Appendix
Appendix I
The conventional, deterministic form of the von Bertalanffy model for the size y of a
where L∞ is the asymptotic size at infinite age, k is the growth parameter, and t0 is a
correction term allowing that the fish has some specific size y0 = L∞* (1-exp(k * t0)) at
time t = 0. Alternatively, t = t0 might be seen as the time when the fish has zero size.
The model can be easily extended to the case of non-constant growth parameter
k(t), allowing for growth changes. In the general case, the size of the fish at age t is
given by
t
where Q(t ) k ( s ) ds . If we consider a single spurt occurring at time t1 > t0, such that
t0
the growth parameter changes from k = k0 for t < t1 to k = k1 for t > t1, then
yt= L∞* (1- exp(-k0* (t1- t0)- k1* (t- t1))), . if t > t1
106 J Alós (PhD Thesis) Selection drivers of life-history traits in marine coastal fishes
In addition we have fitted a generalization of this model that allows for a change in the
yij= L∞i* (1- exp(-k0i *(t1i- t0i)- k1i* (tj- t1i)))+ εij, for tj > t1
where k0i and k1i are the growth parameters before and after the moment of the
change (t1i).
List of Appendix 107
Appendix II
Pilling et al. (2002), Helser and Lai (2004), and Helser et al. 2007 imposes structure of
the variance covariance matrix of the model parameters. This means that covariance
between any pair of parameters is explicitly estimated. It is claimed that this procedure
Here we use a simpler model and covariance is left free (i.e., not explicitly
estimated by the model). Obviously, in the case that the individual values (i.e. for any
single fish) of a given pair of parameters (e.g., L∞i and t1i) are well estimated, covariance
between them will be well estimated also a posteriori. Demonstration of this was carried
the between-parameter correlation (i.e., parameters obtained using the observed data).
Then, we generated n sets of growth parameters using the mvrnorm() function of the
MASS library of the R-package. This n*5 (i.e., in the case of 5 parameter model)
reflects the known variance-covariance matrix. Then, we generate n growth curves with
theses parameters (adding a proper error term, i.e., the observed one) and with the
observed length-at-age (i.e., the currently observed age). After that, these n curves, for
which we know the individual values of the growth parameters, were submitted to the
Bayesian approach described in the text (see Materials and methods). Finally, the
estimated growth parameters were compared with the known (simulated) values and
they were found to be very similar (r2 ≈ 0.9) and unbiased (slope ≈ 1 and intercept ≈ 0).
Appendix III
Field experiment to estimate the buoyancy, or specific gravity, of the eggs of Serranus
Six adult S. scriba individuals of similar sizes (mean and s.d. 145 ± 15 mm) were
captured on June 2010 in Palma Bay (Fig. 1 of the manuscript) using conventional
hook-and-line recreational fishing gear at depths <20 m and surface water temperatures
of approximately 22°C. Individuals were caught early in the morning and transported
the Balearic Islands). The fish were measured, weighed and placed in a grey cylinder-
seawater. The temperature and salinity of the system was monitored continuously.
In a previous experiment, the fish did not spawn under similar conditions, likely due
(GnRHa), which has been successfully used in other species of the Serranidae family,
such as Ephinephelus marginatus (Marino et al., 2003). GnRHa stimulates the pituitary
synthesis and release of LH and induces ovarian steroidogenesis and oocyte maturation
Individuals were slightly anesthetised with MS222, and a dose of GnRHa (mean and
s.d. of 0.0018 ± 0.0009 ml per g of fish) was inserted in the peritoneal cavity using a
hypodermic needle. The fish were allowed to spawn undisturbed in the tank, which was
110 J Alós (PhD Thesis) Selection drivers of life-history traits in marine coastal fishes
examined for the presence of eggs every hour. After spawning, the tanks were checked
for the presence of fertilised eggs (eggs floating in an intermediate position). Adult
individuals were removed from the holding tank, and the water flow and aeration was
reduced to prevent damage to the eggs. The temperature and salinity remained constant
A sample of approximately 10 eggs was collected every three hours until hatching to
was measured using the density-gradient column method (Coombs, 1981). Briefly, the
salt. The eggs were introduced at the top of the column and settled to a known density
level (i.e., the location where the egg is in hydrostatic equilibrium with the surrounding
fluid). Glass spheres of a known density were used to calibrate the system (Coombs,
1981; Coombs et al., 1985; Coombs et al., 1990). A temperature-controlled water jacket
maintained the apparatus at a stable temperature, similar to the conditions at the time
of capture.
Each sub-sample of eggs was introduced into the gradient column. To select a stable
observational time points (10, 30, and 60 min). The position of the glass spheres in the
density column (cm) was recorded at each observational time point and converted to a
were selected for the experiment. Dead or moribund eggs, which were characterized by
List of Appendix 111
an opaque appearance or rapid sinking to the bottom, were discarded. The sinking or
ascending velocity (w) at each measured time point was calculated based on Stokes’ law:
gd 2
w
18
where g is the gravitational force, d is the diameter of the egg, Δρ is the difference
between the density of the environment and the density of the egg and ν is the
molecular viscosity (Sundby, 1997). We were confident that the properties of the egg
remained in agreement with Stokes’ law because the diameter of the egg and differences
Induced spawning occurred between 21:00 and 21:30 on the first night after the
buoyancy of the eggs over five different time periods prior to hatching. The last
measurement was performed after 29.5 h, and 100% of the eggs in the rearing tank had
hatched 32.5 h after fertilisation, which was the morning of the second day after
fertilisation (Fig. 1 of this appendix). The observed mean and s.d. of the egg diameter
was 799 μm ± 32.7 (n=90). The eggs had a single oil globule and a relatively small
The mean specific gravity was at neutral buoyancy at the time of the first
measurement, although the eggs remained lighter than the surrounding water for the
remaining duration of the experiment (Figure 1 of this appendix). At 200 min after
fertilisation, the average egg density was close to a neutral buoyancy (5.47x10-4 g cm-
3), and some of the eggs were becoming heavier at an ambient temperature, which
112 J Alós (PhD Thesis) Selection drivers of life-history traits in marine coastal fishes
corresponded mainly to the gastrula stages (Figure 1 of this appendix). The average
excess positive buoyancy at the end of the experiment was 2.07 x 10-3 g cm-3, which
experimental conditions.
Figure 1 Specific gravity (g cm-3) of Serranus scriba eggs through development at 22°C
water temperature. A local smoother (95% CI, in grey) has been added to aid in the
the R package). Dashed line depicts the specific gravity of the local seawater at the
culture temperature. Figure also shows three images of the eggs development at the
stages of morula (A, 100 min after fertilization), early (B, 897 min) and late embryo (C,
1,845 min).
List of Appendix 113
A B C
1.027
38.0
1.026 Ambient salinity=37.25 37.5
37.0
T‐corrected specific gravity
1.025 36.5
1.024
1.023
1.022
Appendix references
fish eggs, with particular reference to eggs of the mackerel (Scomber scombrus). Marine
Coombs, S. H., Fosh, C. A., and Keen, M. A. 1985. The Buoyancy and Vertical
Journal of the Marine Biological Association of the United Kingdom, 65: 461-474.
Coombs, S. H., Nichols, J. H., and Fosh, C. A. 1990. Plaice eggs (Pleuronectes platessa
L.) in the southern North Sea: abundance, spawning area, vertical distribution, and
Marino, G., Panini, E., Longobardi, A., Mandich, A., Finoia, M. G., Zohar, Y., and
Mylonas, C. C., and Zohar, Y. 2000. Use of GnRHa-delivery systems for the control of
Appendix IV
Prior distributions used for individuals (i) and populations (j) used for Bayesian
as dnorm (mean and variance), uniform distribution as dunif (minimum and maximum
value) and gamma distribution as dgamma (shape and scale). Lmax is referred to otolith
Appendix V
traits (LH) was tested via simulation. We generated simulated data (length-at-age data)
for one individual with known LHs (Lmax , g, T and h). A Gaussian error (reasonable
otolith reading error) was included to the simulated data using a distribution of mean 0
and standard deviation 0.1 (see Figure 1 of this Appendix). Then the individual values
of LH traits were estimated using the model parameterization described in the text (see
M&M). The distributions of the Bayesian means estimated were compared with the
true values. 5
0 5 10 15
Age (years)
Values estimated trough MCMC from the simulated individual (with known
parameters) were very close to the true values (Table 1 of this Appendix). Credibility
intervals are relatively small and unbiased for all the parameters (Table 1 of this
Appendix).
118 J Alós (PhD Thesis) Selection drivers of life-history traits in marine coastal fishes
Table 1 True and estimated (MCMC) values obtained in the simulation exercise done to check
the performance of the Bayesian framework used in this study (Fig 2). Estimated values are
the Bayesian mean and standard deviation as well as Bayesian credibility intervals. Estimated
values are very close to the true values showing the robustness of the approach.
True values Estimated values (MCMC)
Parameter Bayesian credibility intervals
value Mean SD 2.5% Median 97.5%
Lmax 5 5.01 0.09 4.82 5.01 5.19
T 1.8 1.79 0.20 1.35 1.81 2.14
g 0.6 0.62 0.06 0.53 0.61 0.77
h 1 1.04 0.09 0.92 1.02 1.26
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