DFT Study, and Natural Bond Orbital (NBO) Population Analysis of 2 (2 Hy Dro Xyp Hen Yl) 1 Azaazulene Tautomers and Their Mercapto Analouges
DFT Study, and Natural Bond Orbital (NBO) Population Analysis of 2 (2 Hy Dro Xyp Hen Yl) 1 Azaazulene Tautomers and Their Mercapto Analouges
DFT Study, and Natural Bond Orbital (NBO) Population Analysis of 2 (2 Hy Dro Xyp Hen Yl) 1 Azaazulene Tautomers and Their Mercapto Analouges
com/scientificreports
Azaazulenes, an azulene heterocyclic analogue (Fig. 1), have attracted concern due to their chemical and physical
properties and their biological a ctivity1,2 as anticancer agents3. 1-azaazulenes are the most stable of the several
azaazulene structures. When nitrogen and oxygen (sulphur) atoms in the heterocyclic ring change hydrogen
atoms, tautomers are produced. The proton transfer and hydrogen bonding of the hydrogen atom are significant
properties in chemistry. As a result, equilibrium between (enolimines/thiol and ketoenamines/thione forms) of
2HPhAZ and 2MPhAZ tautomeric forms is expected (Fig. 1).
Understanding the relative stabilities of tautomeric forms and their mutual conversion is a crucial topic
from the standpoint of structural chemistry. Oda et al.4 demonstrated that spectroscopic and X-ray crystal-
lographic investigations supported the structure of 2OHPhAZ. A reasonably substantial absorption in the vis-
ible light spectrum, as well as the X-ray diffraction data4, support the presence of its aromatic and coplanar
nature and an intramolecular hydrogen bond. The stability of 2OHPhAZ, the keto tautomer (2OPhAZ), and
various rotamers (2OHPhAZ-R1:R3) in the gas phase and ethanol was the subject of DFT research by El-
Meligy et al.5. Furthermore, to the best of our experience, we have not found any analysis of the nature of the
1
Chemistry Department, Faculty of Education, Ain Shams University, Cairo 1171, Egypt. 2Chemistry Department,
Faculty of Science, Menoufia University, Shebin El‑Kom 32512, Egypt. *email: [email protected];
[email protected]
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N N
HX H X
X=O enol keto
X=S thiol thione
Figure 1. The tautomeric structure (enolimines/thiol and ketoenamines/thione form) of 2HPhAZ and
2MPhAZ.
Computational details
The gradient-corrected hybrid density functional B3LYP/DFT approach was used for all c omputations9,10. Using
this functional10 and the 6–311 + + G (2d, 2p) basis sets11 as implemented in the Gaussian 09 program12, a com-
prehensive geometry optimization without symmetry constraints was carried out for each structure. Both Gauss
View 5.0.913 and Chem-Craft 1.614 were used to visualize all geometries. The natural bond orbital a pproach15 has
also been used to perform the population analysis at the B3LYP/6–311 + + G (2d, 2p) level of theory using the
Gaussian 09 software package. In this process, sets of natural atomic orbitals (NAOs), natural hybrid orbitals
(NHOs), and natural boundary orbitals (NBOs) are successively changed from non-orthogonal atomic orbitals
(AOs).
Since electron density and other attributes are defined by the fewest number of filled orbitals in the fastest-
convergent manner, all these localized basis sets are complete and define the wavefunctions in the most practical
manner. The second-order perturbation interaction energy (E(2)), which is defined using the NBO technique,
can be used to quantitatively explain this noncovalent bonding-antibonding interaction16–18. The estimation of
the off-diagonal NBO Fock matrix elements is represented by this energy. From the second-order perturbation
method, it may be inferred15.
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Figure 2. The optimized structural for the tautomers and rotamers of 2HPhAZ and 2MPhAZ at B3LYP/
6–311 + + G(2d,2p) level of theory.
forms than the enol and keto forms, respectively. The chemical differences between sulfur and oxygen atoms
are to blame for that. The longest hydrogen bond, O(S)…H, is between the enol and thione forms. The R3(O)
and R3(S) rotamers have the longest O(S)–C bonds among them. The R2(O) and R2(S) produce the biggest
C–O(S)–H bond angle by rotating the phenyl ring. An intriguing feature to note is how the bond length and angle
change when the tautomeric structure’s σF values change19–21. i.e., σF is the value of change in factor of the bond
length and bond angle when adding any para substituent on the benzene ring; in this case (our compounds),
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Table 1. The selected bond lengths in angstrom (Å) and angles in degrees (◦) calculated for the tautomer and
rotamers structures of 2HPhAZ and 2MPhAZ in gas phase, and ethanol using B3LYP/ 6–311 + + G(2d,2p)
level of theory.
when changed to the tautomeric structures of 2HPhAZ and 2MPhAZ compounds, the value of factor of the
bond length and bond angle are changed.
Electronic structure
Enolimines/thiol and ketoenamines/thione are the two π-isoelectronic (tautomeric) structures in which the
2HPhAZ and 2MPhAZ are found. Additionally, research has been done on the three rotameric forms (R1, R2,
and R3). DFT calculations at B3LYP/ 6–311 + + G(2d,2p) level of theory to determine which form is more stable
at the ground state by doing frequency calculations at the same level of calculation, the optimized geometry of
the investigated tautomeric structure was verified as a minimum on the potential energy surface. Figure 2 shows
the optimized structure for the investigated tautomeric structure.
The C1 symmetry point group is where the optimization structures are found (supporting information).
Table 2 displays the total energy and relative energy of the tautomeric and rotameric structures calculated at the
B3LYP/6–311 + + G(2d,2P) in gas and ethanol phases. In case of 2HPhAZ, the studied DFT method qualitatively
gives similar tautomer stability orders in the gas phase and ethanol. The ethanol solvent causes some reordering
of the relative stability of 2MPhAZ conformers.
For tautomerization, the thiol form was found to be more stable than the thione form in the gas phase. The
relative energy difference between thiol and thione in the gas phase is 5.253 kJ at B3LYP/6–311 + + G(2d,2P).
Stabilization of thiol in the gas phase is expected by the presence of a lower and stronger IHB of thione.
On the energy scale, the tautomeric structures are present in a static mixture in the ground state, with the
enol form being (29.492 and 7.737 kJ) more stable than the keto form in gas phase and ethanol, respectively
(Table 2). It has been found that keto/thione form has the lowest HOMO–LUMO gap (2.275/1.852 eV) followed
by enol/thiol forms (3.098/2.980 eV).
In the ground state of rotamers in statical mixes, the R3(O) structure is more stable than the R2(O) and R1(O)
structures, but the R1(S) structure is more stable than the R3(S) and R2(S) structures (Table 2). The stability
of R2(O) and R3(O) can be attributed to the possible intramolecular H bonding interaction of the C–H…N as
Table 2. Relative zero-point corrected energies (ΔE0, kJ/mol), and the energy gap (Eg), for the tautomer and
rotamers structures 2HPhAZ and 2MPhAZ in gas phase, and ethanol at B3LYP/ 6–311 + + G(2d,2p) level of
theory.
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shown in Fig. 2. The slightly higher stability of R3(S) than R2(S) can be due to the anti-position present between
the S26-H28 group and the nitrogen of the azaazulene ring, given the possibility of H28 interaction with the
sulfur atom. The highest gap is in the rotamers. It is widely known that a molecule’s reactivity increases with
decreasing energy g aps22,23. As a result, it is anticipated that the keto/thione form will be more chemically reac-
tive than enol/thiol and their rotamer. The keto/thione compound can function as both an electron acceptor
and donor. The results of the MO calculation show that the computed reactivity in the gas phase and ethanol of
the studied compounds increases in the order.
For 2HPhAZ, enol > keto > R3(O) > R2(O) > R1(O) in gas phase but in ethanol the order of stability is Eno
l > keto > R1(O) > R2(O) > R3(O).
In case of 2MPhAZ, thiol > thione > R1(S) > R3(S) > R2(S) in gas phase. In ethanol, the order of stability
becomes thione > thiol > R1(S) > R3(S) > R2(S) in 2MPhAZ. Our results are agreeing with the previous results
that of 2-(2-Hydroxyphenyl)-1-aza azulene and 2-(2-Mercaptophenyl)-1-aza a zulene5,8.
Table 3. Calculated natural hybrid (NHOs) and the polarization coefficient for each hybrid in the equivalent
NBO (in explanations) for the studied the tautomers and rotamers structures of 2HPhAZ and 2MPhAZ in gas
phase, and ethanol at B3LYP/6–311 + + G(2d,2p) level of theory.
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Table 4. Second order delocalization energies (E(2)) for the studied compounds in gas phase, and ethanol at
B3LYP/6–311 + + G(2d,2p) level of theory, all values are in kcal/mol.
B3LYP/6–311 + + G (2d,2P). For rotamer, R3(O) structure have higher stability than R2(O) and R1(O) struc-
tures, while R1(S) structure has higher stability than R3(S) and R2(S) structures (Table 2).
E(2) (kcal/mol)
Acc
Don. NBO NBO Enol Thiol Keto Thione R1(O) R1(S) R2(O) R2(S) R3(O) R3(S)
lp(O/S) in gas BD*(O/S -C26) in gas 23.33 26.87 18.54 29.32 45.90 41.25 25.14 25.69 31.25 32.12
lp(O/S) in ethanol BD*(O/S -C26) in ethanol 22.43 25.85 19.01 28.12 44.66 40.88 24.33 25.03 30.44 33.03
lp(N) in gas BD*(N-C15) in gas 14.24 17.21 12.08 22.10 12.21 16.32 18.22 28.88 19.78 23.65
lp(N) in ethanol BD*(N-C15) in ethanol 14.00 18.21 11.88 21.86 11.57 15.78 17.54 26.77 19.20 16.69
Table 5. The second-order perturbation energies E(2) (kcal/mol) corresponding to the most important charge
transfer interactions (donor — > acceptor) in the studied compounds in gas phase, and ethanol by using
B3LYP/6–311 + + G(2d,2p) method. lp is the lone pair NBO in the plane.
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Enol Thiol Keto Thione R1(O) R1(S) R2(O) R2(S) R3(O) R3(S)
σC25-O/S26 in gas phase 1.99236 1.97809 1.99291 1.98009 1.99338 1.98159 1.97658 1.98230 1.98704 1.98245
σC25-O/S26 in ethanol 1.99241 1.98202 1.99247 1.98006 1.99348 1.98206 197,628 1.98257 1.97659 1.98302
σC15-N16 in gas phase 1.98071 1.97429 1.98085 1.98219 1.97955 1.98000 1.98895 1.97879 1.97996 1.97893
σC15-N16 in ethanol 1.98092 1.95645 1.97556 1.97645 1.97990 1.98011 1.97972 1.97911 1.98030 1.97910
lp(O/S) in gas phase 1.97378 1.98458 1.96699 1.98348 1.97955 1.98941 1.96785 1.98699 1.97924 1.98825
lp(O/S) in ethanol 1.97559 1.98477 1.97239 1.98229 1.97969 1.98964 1.97839 1.98710 1.97850 1.98846
lp(N) in gas phase 1.88629 1.89328 1.89739 1.91608 1.93333 1.91908 1.91323 1.93496 1.93344 1.93493
lp(N) in ethanol 1.87803 1.89690 1.83173 1.91178 1.93738 1.92479 1.93603 1.93791 1.93724 1.93828
σ*C25-O/S26 in gas phase 0.02026 0.02328 0.01265 0.01238 0.02224 0.02582 0.01524 0.02530 0.01434 0.02668
σ*C25-O/S26 in ethanol 0.02209 0.02368 0.12318 0.01699 0.02295 0.02721 0.01487 0.02593 0.01473 0.02817
σ*C15-N16 in gas phase 0.54345 0.51578 0.02309 0.02572 0.49912 0.50768 0.01715 0.50287 0.01613 0.51806
σ*C15-N16 in ethanol 0.54488 0.51689 0.02487 0.02351 0.49649 0.50578 0.53287 0.50437 0.01854 0.51400
Valence non-Lewis in gas phase 1.99973 1.99978 1.99975 1.99921 1.99974 1.99989 1.99972 1.99979 1.99975 1.99989
Valence non-Lewis in ethanol 1.99974 1.99987 1.99978 1.99954 1.99972 1.99988 1.99975 1.99989 1.99975 1.99989
Rydberg non-Lewis in gas phase 0.00278 0.00264 0.00292 0.00346 0.00290 0.00438 0.00265 0.00479 0.00235 0.00476
Rydberg non-Lewis in ethanol 0.00246 0.00224 0.00289 0.00364 0.00229 0.00483 0.00266 0.00492 0.00255 0.00476
Table 6. The important calculated valence non-Lewis and Rydberg non-Lewis, σ C-O(S) and σ*C-O(S) bond
orbital occupancies in gas phase, and ethanol at B3LYP/6–311 + + G(2d,2p). lp is the lone pair NBO in the
plane.
idealized Lewis picture and thus to small non-covalent corrections to the picture of localized covalent bonds. The
resulting p character of the corresponding sulfur natural hybrid orbital (NHO) of the σC-O(S) bond orbital is also
related to the impact on molecular stability and geometry (bond lengths) of decreased occupancy of the local-
ized σC-O(S) orbital in the idealized Lewis structure or increased occupancy of σ*C-O(S) of the non-Lewis orbital.
In Table 3, for selected compounds at B3LYP level [thiol, thione, R1(S), R2(S), and R3(S)], the p characters of
sulfur σ C-S values are 4.55(4.69), 4.78(4.56), 4.60(4.46), 4.55(4.46), and 4.51(4.51), in gas phase, and ethanol,
respectively. Like this, the lengths of the C-S bonds are 1.787(1.784), 1.760(1.758), 1.797(1.792), 1.794(1.789),
and 1.797(1.792), in gas phase, and ethanol, respectively. For [enol, keto, R1(O), R2(O) and R3(O)], the p
characters of oxygen σ C-O values are 1.79(1.82), 1.00(1.61), 1.87(1.82), 3.67(3.65), and 3.76(3.74), in gas phase,
and ethanol, respectively. Like this, the lengths of the C-O bonds are 1.343(1.356), 1.270(1.289), 1.361(1.366),
1.366(1.367), and 1.369(1.366), in gas phase, and ethanol, respectively. Therefore, the results indicate that the
C-O(S) bond lengths of these compounds are basically controlled by the p character of these hybrid orbitals and
by the nature of the C-O(S) bond.
Conclusion
Using the DFT/B3LYP/6–311 + + G (2d, 2p) level of theory, the electronic for tautomeric and rotameric structures
of 2HPhAZ and 2MPhAZ analogues is explored in gas phase, and ethanol. Enol/thiol is more stable than keto/
thione form for tautomer in the statically mixed ground state in gas phase, which is considered in all computa-
tions in this article. The ethanol solvent causes some reordering of the relative stability of 2HPhAZ and 2MPhAZ
conformers. For rotamer, R3(O) structure have higher stability than R2(O) and R1(O) structures, while R1(S)
structure has higher stability than R3(S) and R2(S) structures. According to our findings, an intriguing aspect
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Enol Thiol Keto Thione R1(O) R1(S) R2(O) R2(S) R3(O) R3(S)
C1 in gas phase -0.16588 –0.16422 –0.19673 –0.5690 –0.17080 –0.1695 –0.1613 -0.1584 –0.1727 –0.1672
C1 in ethanol –0.19941 –0.20172 –0.16537 –0.18866 –0.16690 –0.15447 –0.16307 –0.15853 –0.16709 –0.15176
C2 in gas phase –0.20506 –0.20645 –0.18806 –0.2014 –0.21512 –0.2138 –0.2071 –0.2127 –0.2142 –0.2138
C2 in ethanol –0.19959 –0.13607 –0.18607 –0.18011 –0.21285 –0.21304 –0.20808 –0.21026 –0.21256 –0.21107
C3 in gas phase –0.11955 –0.13963 –0.13884 –0.1349 –0.12243 –0.1215 –0.1234 –0.1125 –0.1236 –0.1120
C3 in ethanol –0.13183 –0.03984 –0.11380 –0.12132 –0.12298 –0.11808 –0.12148 –0.11567 –0.12317 –0.10876
C4 in gas phase –0.20004 –0.20313 –0.15073 0.73914 –0.18809 –0.1854 –0.1971 –0.2021 –0.1878 –0.1881
C4 in ethanol –0.10506 –0.20032 –0.15604 –0.07596 –0.18850 –0.21053 –0.19219 –0.19394 –0.19564 –0.20975
C5 in gas phase –0.06764 –0.25527 –0.04805 –0.0659 –0.07527 –0.0733 –0.0672 –0.0733 –0.0738 –0.0714
C5 in ethanol –0.06638 –0.12134 –0.05409 –0.05101 –0.08120 –0.07957 –0.07255 –0.07818 –0.07910 –0.07723
C6 in gas phase –0.14915 –0.14289 –0.20378 –0.2764 –0.14398 –0.1442 –0.1370 –0.1341 –0.1481 –0.1418
C6 in ethanol –0.19480 –0.14964 –0.16575 –0.18868 –0.15308 –0.14190 –0.14926 –0.14494 –0.15422 –0.13930
C7 in gas phase 0.21167 0.18890 0.22981 0.21355 0.18714 0.19214 0.19170 0.18670 0.19207 0.18711
C7 in ethanol 0.20011 0.16813 0.21993 0.21802 0.18056 0.18024 –0.18364 0.17780 0.18246 0.17875
C13 in gas phase –0.25869 –0.87975 –0.24933 –0.2413 –0.26482 –0.2618 –0.3094 –0.2803 –0.2543 –0.2655
C13 in ethanol –0.27109 –0.31545 –0.25853 –0.25116 –0.27539 –0.27226 –0.28988 –0.28425 –0.27459 –0.27778
C15 in gas phase 0.22868 0.05725 0.25384 0.25612 0.21258 0.21168 0.21496 0.20875 0.20507 0.20507
C15 n ethanol 0.20785 0.32704 0.24851 0.24771 0.19985 0.19580 –0.19179 0.19274 0.19051 0.19088
N16 in gas phase –0.58236 –0.60289 –0.53433 –0.5412 –0.48994 –0.5132 –0.5088 –0.5113 –0.5210 –0.5129
N16 in ethanol –0.60716 –0.56601 –0.52220 –0.53769 –0.55563 –0.55665 –0.56684 –0.56395 –0.57059 –0.56467
C17 in gas phase –0.24695 –0.24303 –0.26237 –0.2422 –0.23959 –0.2247 –0.2528 –0.2211 –0.2811 –0.2214
C17 in ethanol –0.25566 –0.22810 –0.28993 –0.25793 –0.25197 –0.22974 –0.26533 –0.26649 –0.28099 –0.22884
C18 in gas phase –0.13887 –0.61862 –0.14385 –0.1462 –0.14321 –0.1461 0.35002 –0.1338 0.34961 –0.1324
C18 in ethanol –0.15229 –0.16652 –0.15189 –0.15134 –0.15619 –0.15793 –0.34626 –0.06527 0.34849 –0.15498
C19 in gas phase –0.17230 –0.17539 –0.16098 –0.1697 –0.17461 –0.1778 –0.1663 –0.1776 –0.1708 –0.1782
C19 in ethanol –0.18804 –0.18657 –0.17880 –0.18282 –0.18591 –0.18805 0.18157 –0.18931 –0.18199 –0.23480
C22 in gas phase –0.16354 0.72442 –0.19917 –0.1527 –0.12282 –0.1101 –0.1623 –0.1105 –0.1229 –0.1077
C22 in ethanol –0.15962 –0.16897 –0.20667 –0.16102 –0.13693 –0.11513 –0.14816 –0.14456 –0.13562 –0.11493
C23 in gas phase –0.23910 –0.23362 –0.26583 –0.22041 –0.27668 –0.2269 –0.2548 –0.2299 –0.2335 –0.2325
C23 in ethanol –0.25555 –0.23438 –0.29957 –0.24746 –0.27993 –0.23643 –0.24481 –0.23739 –0.24919 –0.12436
C25 in gas phase 0.37617 –0.48595 0.43933 –0.12756 0.35734 –0.1174 –0.5649 –0.1310 –0.1398 –0.1270
C25 in ethanol 0.35354 –0.14899 0.40459 –0.13609 –0.34650 –0.13237 –0.16298 –0.14337 –0.16363 –0.18300
O26/S26 in gas phase –0.69700 0.02443 –0.71822 –0.27762 –0.65636 0.10941 –0.6867 0.04712 –0.6831 0.0578
O26/S26 in ethanol –0.74332 –0.01982 –0.83839 –0.43861 –0.69924 0.05444 –0.70641 0.02862 –0.70657 0.02977
Table 7. Atomic charge distribution described in terms of natural population analysis (NPA) for the studied
compounds in gas phase, and ethanol by using B3LYP/6–311 + + G(2d,2p) method.
to note is how the bond length and angle alter as a function of the tautomeric structure’s σF values. The examined
compounds’ increasing Hammett constants result in a rise in the p characteristics of the sulfur NHO σ C-S(O) bond
orbitals. There is a strong hyperconjugated interaction between nO(S)—> σ*C25-O26(S26) and nO(S) —> σ*C15-N16 in the
compounds studied. The weakness in the O(S)-C sigma bond is due to nO(S)— > σ*C25-O26(S26) and nO(S)—> σ*C15-N16
delocalization, which is responsible for the longer O(S)-C bond lengths and hence contributes to the tautomeriza-
tion of 2HPhAZ and 2MPhAZ. With an increase in the examined compounds’ Hammett constants, the charge
transfer energy reduces. The intra- and intermolecular interactions can be significantly influenced by the elec-
trostatic attraction or repulsion between atoms. The NBO analysis focuses on the availability of a device of high
quality, shedding light on both the HB-related electron delocalization-induced hyperconjugate effects and the
many effects found to influence the NH-stretch spectral shift, i.e., the main measurable quantity on which most
of the spectroscopic approaches are based.
Data availability
All data generated or analyzed during this study are included in this published article [and its supplementary
information files].
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Author contributions
S.A.H.: Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Visualization, Writing-
original draft, Writing-review & editing. A.B.E.-M. has reversed the writing for the article, Writing-review &
editing and Methodology. A.M.E.-N. find the point of the article, researches them, Formal analysis, and Meth-
odology. S.H.E.-D. prepared the studied compounds, and Methodology.
Funding
Open access funding provided by The Science, Technology & Innovation Funding Authority (STDF) in coopera-
tion with The Egyptian Knowledge Bank (EKB).
Competing interests
The authors declare no competing interests.
Additional information
Supplementary Information The online version contains supplementary material available at https://doi.org/
10.1038/s41598-023-50660-w.
Correspondence and requests for materials should be addressed to S.A.H. or A.B.E.-M.
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