Urine Sampling and Culture in The Diagno
Urine Sampling and Culture in The Diagno
Urine Sampling and Culture in The Diagno
Review Article
The manner in which urine is collected and processed still grow on culture medium. However,
before it is cultured can affect the validity of the culture urinary leukocytes may be altered by
result. Children who are toilet trained can provide clean refrigeration, possibly affecting interpretation
voided urine samples. Samples of urine from children of the urinalysis.
who are not toilet trained can be obtained by "clean
voided" bag samples, suprapubic bladder aspiration A positive urine culture
(SPA), or transurethral bladder catheterization (TUBC). The standard definition of a positive urine
SPA and TUBC are invasive but are the only valid ways culture is ≥105 CFU/mL together with pyuria (eg,
to collect urine for culture in febrile young infants leukocyte count ≥105 WBC/mL). Normal values in a
under two months of age and older infants and children noninfected midstream, clean-catch sample are <105
with unexplained fever who are younger than two years colony-forming units (CFU, primarily due to
of age and ill enough to merit immediate antimicrobial contaminating Escherichia coli) and <10,000 leukocytes
therapy [1]. per mL of urine [3-7]. Contamination in the absence of
UTI is typically suggested by high CFU counts without
Urine sampling significant leukocyturia in a patient with no urinary
The likelihood of detecting a urethral tract tract symptoms such dysuria, frequency or fever.
infection (UTI) by urine culture is highest if urine is
collected on arising. This sample is likely to be most However, this definition does not apply to all
concentrated and bacteria in the bladder will have had patients. If fecal contamination has been ruled out, a
time to multiply overnight. However, getting an ideal lower colony count (>102/mL) may be indicative of
sample is not practical since most cultures are obtained UTI. This was best demonstrated in studies in women
at the time the patient is seeing the clinician. In this who had dysuria and frequency but a midstream culture
setting, the combination of a more dilute urine and contained less 10 5 CFU/mL [1, 8, 9]. This condition
partial bacterial washout due to multiple voids may had been called the acute urethral syndrome [1]. In one
lower the colony count below the accepted definition study, for example, 42 such women (most of whom had
for a UTI. ≥102 CFU/mL on culture of a midstream specimen) who
also had pyuria underwent suprapubic bladder
The following steps should be performed to minimize aspiration. Thirty seven had a positive aspirate culture:
the degree of bacterial contamination. 24 E. coli, 3 Staphylococcus saprophyticus, and 10
Local disinfection of the meatus and adjacent Chlamydia [1]. All of these women responded to
mucosa should be performed with a non- appropriate antimicrobial therapy. In comparison, a
foaming antiseptic solution; this region should positive culture was very uncommon in women with
then be dried with a sterile swab to avoid similar symptoms but no pyuria.
mixture of the antiseptic with urine.
Contact of the urinary stream with the mucosa Similar findings have been reported by others.
should be minimized by spreading the labia in In a gynecology clinic at a student health center, for
females and by pulling back the foreskin in example, 33 percent of women with urinary tract
uncircumcised males. symptoms had ≥105 CFU/mL while another 46 percent
The first voided specimen should be discarded had CFU counts between 102 and 104 /mL [10]. When
since the initial urine flushes urethral asymptomatic patients were included, there was a
contaminants. It is the second, midstream stepwise relation between the colony count and the
sample that should be sent to the laboratory. likelihood of symptoms.
Evaluation of the last few drops of urine is
indicated after prostatic massage in men with On the basis of these findings, it has been
suspected prostatitis. Firm prostatic massage suggested that a CFU count ≥102 /mL be considered
per rectum, from lateral to midline on each positive on a midstream urine specimen in women with
side, causes the contents of the prostatic ducts acute symptoms and pyuria. It has been estimated that
to be expressed; vertical strokes in the midline 88 percent of such women have a UTI [8]. If symptoms
will then project the secretions into the urethra persist and the standard bacterial culture is negative, a
and permit counting of leukocytes. pelvic examination should be performed with culture of
The urine sample should be sent immediately a cervical swab for Chlamydia.
to the bacteriology laboratory since bacteria
will continue to proliferate in the warm It is not well understood why some infected
medium of freshly voided urine, leading to women have low colony counts. Two possibilities are
increased bacterial counts. If such immediate that low counts reflect an earlier stage of infection and
referral is not possible, the container should be that low counts reflect the efficacy of bladder washout
transported in iced water and then stored in a during urination to eliminate the organisms.
refrigerator at 4ºC. Cooling stops bacterial
growth, but the following day the bacteria can
There are also several other settings in which a When organisms other than E. coli and Proteus
colony count of ≤105 /mL often represents true infection are present. Included in this group are
rather than contamination: Pseudomonas, Klebsiella-Enterobacter-
In patients already being treated with Serratia, and Moraxella species, particularly in
antimicrobials. symptomatic patients with an indwelling
In men in whom contamination is a much bladder catheter.
lesser problem.
Results are in qualitative and semi- the strip need to be compare with colour chart as below
quantitative. The test strip that has been dip into the in figure 2b.
urine will change in color. Than the colour produce in
Fig-2b: (Chart 1 – Colour chart provided by the manufacturer: Source Siemens Multistix 10 SG)
In a review of six studies including women cloudiness, dysuria and nocturia) were also taken into
aged 17 to 70 with suspected UTI in primary care account. The negative predictive value was 67 percent
settings; positive dipstick findings (nitrite or leukocyte for none of the features, and the positive value was 82
esterase and blood) had sensitivity and specificity of 75 percent for three features. The authors concluded that
and 66 percent, respectively [18]. A meta-analysis dipstick results can modestly improve, but poorly rule
including 70 publications noted concluded that urine out infection [21]. Among 2252 women with overactive
dipstick test alone is useful when both nitrite and bladder, dipstick test was not sufficient to identify
leukocyte esterase tests are negative (sensitivity 68 to patients with UTI (sensitivity and specificity 44 and 86
88 percent) [19]. A systematic review including 30 percent, respectively) [22, 23]. Thus, a positive test is a
studies noted that a positive leukocyte esterase or nitrite reliable index of significant bacteriuria, though a
test had the highest sensitivity and the lowest negative negative test does not exclude bacteriuria. Reasons for a
likelihood ratio [20]. Subsequent studies reveal fewer negative nitrite test in the presence of bacteriuria
positive results of the dipstick test. A total of 434 adult include insufficient bladder incubation time for
females with suspected lower UTI in a primary care conversion of nitrate to nitrite, low urinary excretion of
setting were assessed. Presence of blood was a criterion nitrate, inability of some organisms to convert nitrate to
added to the nitrite and leukocyte esterase tests. Sixty- nitrite such as E. faecalis and decreased urine pH due to
six patients had confirmed UTI. Clinical criteria (urine cranberry juice or other dietary supplements.
Fig-2c (Chart 1 – Colour chart provided by the manufacturer: Source Siemens Multistix 10 SG)
Parameter Normal Influence factor such diet and environment that interfere Clinical significance
reference results
range (Limit of detection)
Description for False Positive and False Negative:
Results from the strip shown positive or negative (nil) but
not caused by the organ problem.
Blood Negative False Positive: Taking any food that can colour the urine or 1. Hematuria
having menstrual. Urine exposed to hypochlorite as chlorox. (nephritis,trauma)
False Negative: Taking Vitamin C (ascorbic acid) 2. Myoglobinuria
Bilirubin Negative False Positive: Taking medicine such as chlorpromazine or 1. Liver diseases as
phenazopyridine. hepatitis
False Negative: Taking Vitamin C (ascorbic acid). Urine 2. Jaundice
exposed to sunlight or lamp.
Urobilinogen 3.2 – 16 False Positive: Urine contaminated with p-aminobenzoic 1. Liver diseases as
umol/L acid. cirrhosis
False Negative: Urine exposed to sunlight or lamp. 2. Hemolytic anemia
Ketone Negative False Positive: Taking low carbohydrate such as wheat or 1. Ketonuria
rice, vomit or diarrhoea’. Urine exposed to moisture too long. 2. Diabetic
Taking medicine such as MESNA and captopril. Ketoacidosis
3. Prolonged fasting
Protein Negative dan False Positive: Extreme exercise, dehydrated, taking high 1. Fever
Trace protein or emotional stress. Urine exposed to hypochlorite as 2. Proteinuria
(<0.15g/L) chlorox or blood. 3. Kidney disease
4. Nephrotic syndrome
Nitrite Negative False Positive: Urine exposed to room temperature more Urinary Tract Infection
than 2 hours.
False Negative: Taking Vitamin C (ascorbic acid). Collect
urine so early (less bacteria incubation period in bladder).
Glucose Negative False Positive: Taking Vitamin C (ascorbic acid). 1. Glucosuria
False Negative: Low glucose renal threshold and high 2. Diabetis mellitus
ketone. 3. Renal glycosuria
pH pH5 hingga More alkaline: Diets with a high content of vegetables and 1. Kidney stone
pH7.5 citrus fruit.Vomit or starvation. Urine exposed to room 2. Metabolic acidosis
temperature for more than 2 hours. 3. Renal tubular
acidosis
Specific 1.002 hingga False Positive: Dehydrated diarrhoea or taking antibiotic or Diabetis insipidus
Gravity 1.030 diuretic medicines (substance that removes water from the
body by promoting urine formation and the loss of salt
(sodium). Urine exposed to room temperature for more than
2 hours.
Leukocyte Negative False Positive: Urine exposed to Formalin or hypochlorite as 1. Urinary Tract
esterase chlorox. Taking Vitamin C (ascorbic acid). High specific Infection
gravity. 2. Pyuria
False Negative: Glucose level more than 3g/dL. Taking 3. Kidney stone
antibiotic such as cephalexin, cephalotin and tetracycline. 4. Acute inflammation
Renal calculus
antibiotics on the basis of a urinalysis from a clean of contamination (0 versus 73 percent for mixed growth
voided bag urine specimen. Thus, another urine sample from both bag and clean voided samples; and 0 versus 6
for urinalysis and culture should be collected by percent and 13 percent for intermediate growth from
invasive means if the urinalysis from the bag sample clean voided and bag samples, respectively).
suggests a UTI by any of the following:
Positive leukocyte esterase or nitrite test The following steps are performed [35, 36]
Greater than 5 white blood cells per high- The child is restrained in the supine and frog
power field (spun urine) leg position. This position permits adequate
Presence of bacteria on Gram stained urine stabilization of the pelvis.
(unspun urine) The site for needle insertion, in the midline,
approximately one to two centimeters above
Monitoring the clinical course of the infant or the pubic symphysis, is widely prepared with
child without antibiotic therapy is a reasonable course povidone-iodine solution.
of action if the urinalysis is not suggestive of UTI. The planned puncture site may be locally
However, a negative urinalysis does not exclude a UTI. anesthetized with lidocaine. Many
practitioners do not perform this step because
Clean voided samples they believe it is more painful than the
Children who are toilet trained can provide procedure itself.
clean voided midstream urine samples. Cleansing the The urethral opening should be occluded just
perineum with soap prior to urine collection may before needle insertion because the procedure
decrease the rate of contamination [29]. will stimulate urination in many children. This
is accomplished by squeezing the penile
We suggest using the following technique to collect urethra in boys or applying urethral pressure to
urine samples: the meatus in girls [35].
For girls, the labia should be spread and the A 1.5 inch, 22-gauge needle attached to a 3 or
perineum cleansed two to three times with 5 mL syringe is inserted one to two
nonfoaming antiseptic solution or mild soap. centimeters above the pubic symphysis. The
For boys, the meatus should be cleansed in a needle should be angled 10 to 20 degrees
similar fashion. The foreskin should be cephalad and advanced under negative
retracted before cleansing for those who are pressure until urine returns. The needle should
uncircumcised. be partially withdrawn and redirected at an
Contact of the urinary stream with the mucosa angle more perpendicular to the frontal plane if
can be minimized by pulling back the foreskin the initial attempt is unsuccessful.
in boys who are uncircumcised and by
spreading the labia in girls during urination. Urine is not likely to be obtained after the third
The child should urinate into a toilet or urinal. attempt and thus, one can either perform transurethral
Midway through urination, a specimen should bladder catheterization or wait 15 to 30 minutes for the
be collected in a sterile container. bladder to become more distended [36].
Transurethral bladder catheterization (tubc) external bladder sphincter. This can generally
The catheterization of the urethra is another be overcome by maintaining traction on the
safe and effective method for obtaining urine samples penis, while applying gentle pressure with the
for culture in most infants and children who are not catheter. The catheter should never be forced
toilet trained. Specimen contamination may occur in up
to 15 percent of children under two years of age and is Girls
more common in uncircumcised boys, infants under six The urethra may be difficult to visualize in
months of age, and children in whom the urethra is not girls. An assistant often is needed to retract the
well visualized or who require several attempts to pass labia majora. In addition, redundant tissue
the catheter [42]. An explanation of the anatomy and around the introitus can sometimes obscure the
the indications for the procedure should be given to urethral meatus. Swabbing the area from front
parents and caregivers before transurethral bladder to back may push this tissue out of the way and
catheterization is performed to avoid unnecessary permit the povidine-iodine solution to pool in
parental anxiety about the manipulation of their child's the meatus, making it easier to identify.
genitals. In addition, whether the child has latex allergy The catheter is inserted into the urethral
must be determined because the condition is common in meatus until urine returns. Catheters that are
children with spina bifida and other conditions that inadvertently placed in the vagina may be left
require frequent bladder catheterization. in place to serve as a landmark for subsequent
attempts.
The following steps are performed The first few drops of urine obtained should be
The child is restrained in the supine and frog discarded to prevent contamination of the urine
leg position. This position permits adequate with urethral organisms or cells. A prospective
stabilization of the pelvis and complete study comparing early and later urine samples
visualization of the external genitalia. obtained by TUBC in 86 children
The anterior urethra is cleansed thoroughly demonstrated that inclusion of the early stream
with povidone-iodine solution. urine increases false positive results on
A sterile lubricant jelly is applied to the end of urinalysis for white blood cell counts and
an appropriately sized catheter (5 French for bacteria detection [45].
children younger than six months; 8 French for
those between six months and adolescence, Portable ultrasound
and 10 French for adolescents). Portable ultrasound (US) is increasingly
available in the emergency department and helps to
The efficacy of using topical lidocaine to improve the success rate of obtaining urine with TUBC.
reduce pain during urethral catheterization in children is In a prospective study, the success rate for obtaining
uncertain. In one randomized trial, children who were urine on the first attempt with US was 96 percent
catheterized using a lubricant containing lidocaine (versus 72 percent without US) [46].
experienced less pain during the procedure [43]. In a
similar report in infants, however, there was no Complications
difference in pain scores with and without topical Complications of bladder catheterization are
lidocaine [44]. If a topical anesthetic is used, it should minimal and include urethral trauma and microscopic
be applied two to three minutes before the procedure is hematuria. In addition, catheterization can cause
performed. iatrogenic infection. However, this risk was assessed by
the AAP subcommittee on UTI and found to be
Boys extremely low, and no change was made in the
The foreskin of the glans is retracted gently to recommendation to perform the procedure.
permit complete visualization of the urethral
meatus if the boy is uncircumcised. The Comparison of suprapubic bladder aspiration and
foreskin must be repositioned after the transurethral bladder catheterization
procedure to prevent paraphimosis. Few studies have compared suprapubic bladder
The urethra is straightened by using the aspiration and urethral catheterization in infants and
nondominant hand to hold the penis children:
perpendicular to the lower abdomen. Gentle One hundred infants younger than six months
traction is applied. of age who were being evaluated for febrile
The catheter is inserted with the dominant illness, suspected UTI, or sepsis were
hand until urine returns. randomly assigned to undergo SPA or TUBC.
As the catheter is being advanced, it can be TUBC was more successful (100 versus 46
palpated along the posterior aspect of the percent) but took more time (mean time of 81
penis. Resistance may be encountered near the versus 17 seconds) than did SPA [31]. In
base of the penis due to contraction of the
addition, TUBC was 100 percent successful present. When bacteriuria is significant, the test is
after failed SPA. positive about 80 percent of cases in which the urine
Thirty-three neonates who required sterile has incubated for at least four hours in the bladder.
collection of urine were randomly assigned to Leukocyte esterase corresponds to pyuria and nitrite
urine collection by SPA or TUBC [46]. TUBC reflects the presence of Enterobacteriaceae, which
was more successful (81 versus 65 percent), convert urinary nitrate to nitrite.
but the volume of urine obtained was
insufficient for analysis more often (69 versus
41 percent).
RECOMMENDATION
Among patients with symptoms suggestive of
Urine samples from 42 children, aged three
a UTI (dysuria and frequency), the diagnosis can be
months to 10 years, were obtained by SPA and
confirmed by sending a clean-catch specimen for
TUBC after elective surgery. TUBC samples
culture and for urinalysis. One suggested exception
were divided into first and second portions
recommended by most experts is a symptomatic young
[33]. Sterile cultures were obtained more often
woman with pyuria (detected by urinalysis or dipstick)
from SPA than from second TUBC sample,
who has apparently uncomplicated cystitis. It has been
and more often from second than from first
recommended that a CFU count ≥102 /mL be considered
TUBC sample (95 versus 80 versus 60
positive on a midstream urine specimen in women with
percent). When cultures with nonpathogenic
acute symptoms and pyuria whereas true infection
organisms or colony counts less than 10.000
without pyuria is unusual, pyuria can occur in the
per mL/urine were assumed to be
absence of apparent bacterial infection, particularly in
contaminated, the agreement between SPA and
patients who have already taken antimicrobials most
TUBC for "sterility" was 98 percent for the
often due to self-medication. It is important to note that
second portion and 93 percent for the first.
in Uroepithelial tumor when the more common causes
of sterile pyuria have been eliminated, patients with
Processing of urine samples
dysuria and frequency should be tested for atypical
The urine sample should be sent immediately
organisms, such as Chlamydia, Ureaplasma
to the bacteriology laboratory because bacteria will
urealyticum, or tuberculosis.
continue to proliferate in the warm medium of freshly
voided urine, leading to increased bacterial counts. If
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Cite This Article: Iddah, M. Ali & Benard O. Wesonga (2021). Urine Sampling and Culture in the Diagnosis of Urinary
Tract Infection: A Review Article. East African Scholars J Med Surg, 3(4), 59-69.