JCM 00910-19
JCM 00910-19
JCM 00910-19
crossm
a Section of Infectious Diseases, Department of Medicine, University of Illinois College of Medicine, Peoria, Illinois, USA
b Division of Infectious Diseases, Department of Medicine, Washington University School of Medicine, St. Louis, Missouri, USA
c
Department of Pathology and Immunology, Washington University School of Medicine, St. Louis, Missouri, USA
ABSTRACT There is limited knowledge on the incidence, diagnostic yield, and cost
associated with inappropriate repeat urine cultures. The factors that affect repeat
urine culturing practices are not well understood. We conducted a retrospective
study of adult inpatients who had ⱖ1 urine culture performed during their hospital-
ization between January 2015 and February 2018. We analyzed the proportion of in-
appropriate repeat urine cultures performed ⬍48 h after the index culture. We de-
fined an inappropriate repeat urine culture to be a repeat urine culture performed
following a negative index culture or a repeat urine specimen obtained from the
same urinary catheter. Overall, 28,141 urine cultures were performed on 21,306 pa-
tients. There were 2,060 (7.3%) urine cultures repeated in ⬍48 h. Of these, 1,120
(54.4%) urine cultures were inappropriate. Predictors for inappropriate repeat urine
cultures included collection of the initial urine sample for culture in the emergency
department (adjusted odds ratio [aOR], 5.65; 95% confidence interval [CI], 4.70 to
6.78), male gender (aOR, 1.61; 95% CI, 1.42 to 1.84), congestive heart failure (aOR,
1.20; 95% CI, 1.03 to 1.38), and a longer hospital stay (aOR, 1.01 per day; 95% CI,
1.00 to 1.01). A patient with an index urine culture obtained from an indwelling
catheter (aOR, 0.65; 95% CI, 0.53 to 0.80) was less likely to have an inappropriate re-
peat culture. Among 1,120 negative index urine cultures, only 4.7% of repeat cul-
tures were positive for bacteriuria. The estimated laboratory charges for inappropri-
ate repeat urine cultures were $16,800 over the study period. Among inpatients,
over half of all urine cultures repeated in ⬍48 h were inappropriate. This offers an
opportunity for diagnostic stewardship and optimization of antimicrobial use. Citation Foong KS, Munigala S, Jackups R, Jr,
Yarbrough ML, Burnham C-AD, Warren DK.
2019. Incidence and diagnostic yield of repeat
KEYWORDS diagnostic stewardship, diagnostic yield, inappropriate testing, urine culture in hospitalized patients: an
opportunity for diagnostic stewardship. J Clin
urine culture Microbiol 57:e00910-19. https://doi.org/10
.1128/JCM.00910-19.
Editor Nathan A. Ledeboer, Medical College of
Clostridioides difficile infection (5). Utilization practices, the diagnostic yield of repeat
urine culture among hospitalized patients, and the factors that affect ordering practices
are not well understood.
The purpose of our study was to evaluate the incidence, predictors, diagnostic yield,
and economic burden of inappropriate repeat urine cultures performed less than 48 h
after the index culture among hospitalized patients. These results have the potential to
improve diagnostic test utilization, thereby reducing health care costs and minimizing
inappropriate antimicrobial therapy.
RESULTS
A total of 28,141 urine cultures were performed among 21,306 hospitalized patients
during the study period. There were 23,224 clean-catch specimens, 97 straight cathe-
terized specimens, 4,567 indwelling catheter specimens, and 253 procedural speci-
mens. Of these, 4,678 (22.0%) patients had more than one urine culture performed,
accounting for 11,513 of all urine cultures (4,678 index cultures, 6,835 repeat urine
cultures). Among the 4,678 patients with repeat urine cultures, 1,868 (39.9%) had
repeat urine cultures performed within 48 h following the index culture. We identified
that 1,120 (54.4%) of 2,060 urine cultures were inappropriately repeated within 48 h
following the index urine culture. Of all inappropriate repeat testing, the proportion
was the highest for patients who had clean-catch index urine cultures (94.5%) and who
were admitted to intensive care units (ICUs) (40.2%). Only 53 (4.7%) of 1,120 inappro-
priate repeat urine cultures performed within less than 48 h had a positive urine culture.
Of these, 41.5% were positive for Enterobacteriaceae, 18.9% were positive for entero-
cocci, and 17.0% were positive for Candida spp.
Baseline demographics were relatively similar between the control group and the
groups with inappropriate repeat urine cultures (Table 1). In univariable analysis,
patients with inappropriate repeat urine culture testing were more likely to be male
(59.1% versus 47.1%, P ⬍ 0.001), have a sample for the index urine culture obtained in
the emergency department or other outpatient settings (16.8% versus 3.6%, P ⬍ 0.001),
and have a longer median length of hospital stay (9 versus 7 days, P ⬍ 0.001). Index
urine cultures were less likely to be of an indwelling catheterized specimen in the
inappropriate repeat testing group (10.3% versus 13.6%, P ⫽ 0.002). There was no
difference in the proportion of urinalyses performed in association with the index
cultures between the two study groups. The majority of the inappropriate repeat urine
cultures were ordered by the same clinical service that ordered the index culture,
ranging from 61.5% to 96.1% (Table 2). Notably, 29% (n ⫽ 325 out of 1,120) of
inappropriate repeat urine cultures were ordered by the same physician.
Among inpatients who had at least one urine culture, the independent predictors
associated with having an inappropriate repeat urine culture performed within 48 h of
the index culture included an initial urine culture performed with a specimen collected
in the emergency department (adjusted odds ratio [aOR], 5.65; 95% confidence interval
[CI], 4.70 to 6.78), male gender (aOR, 1.61; 95% CI, 1.42 to 1.84), congestive heart failure
(aOR, 1.20; 95% CI, 1.03 to 1.38), and a longer hospital stay (aOR, 1.01 per day; 95% CI,
1.00 to 1.01 per day). An index indwelling catheterized urine culture (aOR, 0.65; 95% CI,
0.53 to 0.80) was less likely to be associated with inappropriate repeat testing. In our
sensitivity analysis, there were no significant changes in our univariable and multivari-
able results when we compared all inpatients who had repeat urine cultures performed
within less than 48 h, irrespective of their clinical appropriateness criteria (data not
shown). The estimated laboratory charges for these inappropriate repeat urine cultures
were $16,800 during the 38-month study period.
DISCUSSION
In this retrospective study, we found that, for 7.3% of all inpatient urine cultures,
repeat testing was performed within 48 h following an index culture and that 54.4% of
these repeated urine cultures were inappropriate, based on previously published
criteria. Among inpatients with a negative index urine culture, the diagnostic gain of an
inappropriate urine culture repeated within 48 h for detecting bacteriuria was only
4.7%. Several other studies have examined the utility of repeat microbiological cultures
among inpatients. However, these studies were performed in the late 1990s, and the
landscape of diagnostic test utilization and antimicrobial resistance has changed
considerably since that time. A study by Bates et al. found that 26% of the repeat urine,
sputum, and stool cultures performed within 36 h were redundant (2). Onderdonk et al.
reported that 14.6% of the repeated urine cultures were unnecessary, based on
predefined testing frequency criteria (e.g., no more than one urine culture per day) (11).
Nevertheless, the proportion of inappropriate inpatient urine cultures repeated in less
TABLE 1 Characteristics and comparison of risk factors for inappropriate repeat urine culture performed within 48 h following the index
urine culture among 21,306 inpatients with ⬎1 urine culturej
Value for the following patients: Multivariable analysis
Inpatients with >1
inappropriate repeat Remaining
All inpatients urine culture in patientsa
Characteristic (n ⴝ 21,306) <48 h (n ⴝ 1,040) (n ⴝ 20,266) P value aOR (95% CI) P value
No. (%) of male patients 10,155 (47.7) 615 (59.1) 9,540 (47.1) ⬍0.001 1.61 (1.42–1.84) ⬍0.001
Median (IQR) age (yr) 62 (49–72) 61 (49–71) 62 (49–72) 0.175 1.00 (0.99–1.00) 0.088
Median (IQR) length of stay (days) 7 (4–16) 9 (4–20) 7 (4–16) ⬍0.001 1.01 (1.00–1.01) ⬍0.001
No. (%) of patients with an urinalysisf 6,738 (31.6) 310 (29.8) 6,428 (31.7) 0.196
No. (%) of patients with an abnormal 3,915 (18.4) 170 (16.3) 3,745 (18.5) 0.080
urinalysisg
dIn the inappropriate repeat urine culture arm, 75% of the initial cultures were index cultures, while 25% were not.
eOutpatient facility (total ⫽ 82) included a clinic, skilled nursing facility, and long-term acute care facility.
fUrinalysis was performed either concomitantly with or within 1 h before the index urine culture.
gAn abnormal urinalysis was defined as a leukocyte esterase value of ⱖ1 on urine dipstick and ⬎5 white blood cells per high-power field on urine microscopy.
jAbbreviations: aOR, adjusted odd ratio; CI, confidence interval; IQR, interquartile range; CHF, congestive heart failure; ESRD, end-stage renal disease; HIV, human
than 48 h remained unclear, and the diagnostic yield of inappropriate repeat urine
cultures was also not described in these two studies (2, 11).
The diagnostic gain from repeat clinical microbiology testing that is performed
within a very short time frame is very limited (2, 3). Despite several clinical practice
guidelines with recommendations for improving urine culturing practice (6, 12, 13),
physician testing practices still vary (1, 2, 5, 11). Previous studies suggested potential
factors contributing to unnecessary repeat testing, including an unawareness of pre-
existing orders and a failure to determine when the last test was performed or to check
Emergency department and other 47 (31.1) 30 (19.8) 48 (31.8) 16 (10.6) 5 (3.3) 3 (2.0) 1 (0.7) 0 1 (0.7) 0
outpatient facilitiesc (n ⫽ 151)
General medicine (n ⫽ 133) 116 (87.2) 0 16 (12.0) 1 (0.8) 0 0 0 0 0 0
jcm.asm.org 5
Journal of Clinical Microbiology
Foong et al. Journal of Clinical Microbiology
pending results (2, 3, 14, 15). In our current study, there was no significant difference
in the proportion of associated urinalysis orders between the inappropriate repeat
urine culture and the cultures for the control groups, suggesting a lack of awareness of
the index culture results rather than the urinalysis results as the driving force for
inappropriate repeat urine culturing practice. These factors could potentially explain
our finding that most inappropriate repeat urine cultures were ordered by the same
clinical service and that up to one-third were ordered by the same physician who
ordered the index culture. ICUs had the highest number of inappropriate repeat urine
cultures. We previously reported that isolated urine cultures, defined as urine cultures
performed without additional diagnostic testing, such as urinalysis or urine microscopy,
were more likely to be ordered among ICU patients (7). Interventions targeted to ICUs
and physicians with outlying ordering behavior may therefore have a great impact on
reducing inappropriate repeat testing.
Among the independent risk factors in our multivariable analysis, a more than 5-fold
increased risk for having inappropriate inpatient repeat urine cultures performed within
48 h following the index culture was found when the initial urine culture was per-
formed with a sample obtained in the emergency department. Other investigators have
found similar findings for cardiac enzyme testing and suggested that unnecessary
duplicative orders occurred more frequently when patients were transferred from the
emergency department to inpatient units (16). The role of computerized physician order
entry (CPOE) systems in altering physician ordering practices to reduce unnecessary labo-
ratory testing has been well described (3, 8, 17). A computerized pop-up alert screen with
pending results and the most recent completed test result with the date has resulted in a
significant reduction in duplicate orders for ordering of panels of tests for acute hepatitis
(17). A similar intervention to indicate to physicians that a recent urine culture was ordered,
is pending, or has been completed, along with the time and date, may lead to more
discerning utilization practices. A thoughtful design of CPOE systems coupled with the
implementation of diagnostic stewardship may play an important role in improving the
cost-effectiveness and quality of clinical patient care (18–20).
In this study, patients who had an index culture of a sample from an indwelling
catheter had a lower risk of having an inappropriate repeat urine culture than those
who had an index culture of clean-catch/straight catheterized and procedural speci-
mens. This finding could potentially be explained by our institutional intervention of
modifying urine testing order sets in the CPOE system, which was implemented in April
2016 (8). Urinalysis parameters of proteinuria and blood in the urine were excluded
from reflex urine culture testing, with the exception of testing for neutropenic patients
(8). This CPOE system-based intervention resulted in a significant reduction in the
number of indwelling catheterized urine cultures (75.6%) being performed compared
to the number of clean-catch urine cultures being performed (37.8%) (8). In our study,
we assigned the indwelling catheterized urine cultures to preintervention (January
2015 to April 2016) and postintervention (May 2016 to February 2018) periods, based
on our prior institutional intervention (8). We found that the proportion of all indwelling
catheterized urine cultures was significantly lower during the postintervention period
(3,217/16,308 [19.7%] versus 1,035/11,833 [8.7%]; P ⬍ 0.001). A similar finding was
observed in the proportion of inappropriate repeat indwelling catheterized urine
cultures in our cohort (219/760 [28.8%] versus 48/360 [13.3%]; P ⬍ 0.001).
A limitation of our study is that it is a retrospective study performed at a single,
academic hospital, which limits the generalizability of our results to other settings. We
did not include the data on antimicrobial use. The absence of chart review precluded
the evaluation of test indication, provider characteristic (e.g., level of training), and
longitudinal provider ordering behavior. To offset the lack of test indication by chart
review, we used a relatively conservative definition for what constitutes an inappro-
priate repeat urine culture to avoid overestimating its prevalence. We also performed
a sensitivity analysis and compared all inpatients who had repeat urine cultures
performed within less than 48 h, irrespective of their clinical appropriateness criteria,
and found similar results (data not shown). Although we used the Medicare Clinical
ACKNOWLEDGMENTS
We have no conflicts of interest to disclose.
This research was supported in part by the Division of Infectious Diseases at the
Washington University School of Medicine.
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