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ORCIDDaniel H. Huson
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- affiliation: University of Tübingen, Germany
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2020 – today
- 2024
[c22]Wenhuan Zeng, Daniel H. Huson:
Leverage the Explainability of Transformer Models to Improve the DNA 5-Methylcytosine Identification (Student Abstract). AAAI 2024: 23703-23704- 2023
- [j46]Anupam Gautam
, Debaleena Bhowmik, Sayantani Basu, Wenhuan Zeng, Abhishake Lahiri, Daniel H. Huson, Sandip Paul:
Microbiome Metabolome Integration Platform (MMIP): a web-based platform for microbiome and metabolome data integration and feature identification. Briefings Bioinform. 24(6) (2023) - [j45]Anupam Gautam, Wenhuan Zeng, Daniel H. Huson:
MeganServer: facilitating interactive access to metagenomic data on a server. Bioinform. 39(3) (2023) - [j44]David Bryant, Daniel H. Huson:
NeighborNet: improved algorithms and implementation. Frontiers Bioinform. 3 (2023) - [j43]Daniel H. Huson, Banu Cetinkaya:
Visualizing incompatibilities in phylogenetic trees using consensus outlines. Frontiers Bioinform. 3 (2023) - 2022
- [j42]Wenhuan Zeng, Anupam Gautam, Daniel H. Huson:
DeepToA: an ensemble deep-learning approach to predicting the theater of activity of a microbiome. Bioinform. 38(20): 4670-4676 (2022) - 2021
- [j41]Rüdiger Zeller, Olaf Delgado-Friedrichs, Daniel H. Huson:
Tegula - exploring a galaxy of two-dimensional periodic tilings. Comput. Aided Geom. Des. 90: 102027 (2021) - [j40]Wenhuan Zeng, Anupam Gautam, Daniel H. Huson:
On the Application of Advanced Machine Learning Methods to Analyze Enhanced, Multimodal Data from Persons Infected with COVID-19. Comput. 9(1): 4 (2021) - 2020
- [j39]Benjamin Albrecht, Caner Bagci, Daniel H. Huson:
MAIRA- real-time taxonomic and functional analysis of long reads on a laptop. BMC Bioinform. 21-S(13): 390 (2020) - [i1]Rüdiger Zeller, Olaf Delgado-Friedrichs, Daniel H. Huson:
Tegula - exploring a galaxy of two-dimensional periodic tilings. CoRR abs/2007.10625 (2020)
2010 – 2019
- 2018
- [j38]Anna Górska, Silke Peter, Matthias Willmann, Ingo Autenrieth, Robert Schlaberg, Daniel H. Huson:
Dynamics of the human gut phageome during antibiotic treatment. Comput. Biol. Chem. 74: 420-427 (2018) - [j37]Daniel H. Huson, Simone Linz:
Autumn Algorithm - Computation of Hybridization Networks for Realistic Phylogenetic Trees. IEEE ACM Trans. Comput. Biol. Bioinform. 15(2): 398-410 (2018) - 2017
- [j36]Monika Balvociute, Daniel H. Huson:
SILVA, RDP, Greengenes, NCBI and OTT - how do these taxonomies compare? BMC Genom. 18(S2) (2017) - [j35]Mohammad Alanjary, Brent Kronmiller, Martina Adamek, Kai Blin, Tilmann Weber, Daniel H. Huson, Benjamin Philmus, Nadine Ziemert:
The Antibiotic Resistant Target Seeker (ARTS), an exploration engine for antibiotic cluster prioritization and novel drug target discovery. Nucleic Acids Res. 45(Webserver-Issue): W42-W48 (2017) - 2016
- [j34]Chao Xie, Chin Lui Wesley Goi, Daniel H. Huson, Peter F. R. Little, Rohan B. H. Williams:
RiboTagger: fast and unbiased 16S/18S profiling using whole community shotgun metagenomic or metatranscriptome surveys. BMC Bioinform. 17(S-19): 277-282 (2016) - [j33]Daniel H. Huson, Sina Beier, Isabell Flade, Anna Górska, Mohamed El-Hadidi, Suparna Mitra, Hans-Joachim Ruscheweyh, Rewati Tappu:
MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data. PLoS Comput. Biol. 12(6) (2016) - 2014
- [j32]Daniel H. Huson, Chao Xie:
A poor man's BLASTX - high-throughput metagenomic protein database search using PAUDA. Bioinform. 30(1): 38-39 (2014) - 2012
- [j31]Benjamin Albrecht, Céline Scornavacca, Alberto Cenci, Daniel H. Huson:
Fast computation of minimum hybridization networks. Bioinform. 28(2): 191-197 (2012) - 2011
- [j30]Céline Scornavacca, Franziska Zickmann, Daniel H. Huson:
Tanglegrams for rooted phylogenetic trees and networks. Bioinform. 27(13): 248-256 (2011) - [j29]Suparna Mitra, Paul Rupek, Daniel C. Richter, Tim Urich, Jack A. Gilbert, Folker Meyer, Andreas Wilke, Daniel H. Huson:
Functional analysis of metagenomes and metatranscriptomes using SEED and KEGG. BMC Bioinform. 12(S-1): S21 (2011) - 2010
- [b1]Daniel H. Huson, Regula Rupp, Céline Scornavacca:
Phylogenetic Networks - Concepts, Algorithms and Applications. Cambridge University Press 2010, ISBN 978-0-521-75596-2, pp. I-XII, 1-362 - [j28]Leo van Iersel, Steven Kelk, Regula Rupp, Daniel H. Huson:
Phylogenetic networks do not need to be complex: using fewer reticulations to represent conflicting clusters. Bioinform. 26(12): 124-131 (2010) - [j27]Suparna Mitra, Max Schubach, Daniel H. Huson:
Short clones or long clones? A simulation study on the use of paired reads in metagenomics. BMC Bioinform. 11(S-1): 12 (2010) - [j26]Johannes Fischer, Daniel H. Huson:
New common ancestor problems in trees and directed acyclic graphs. Inf. Process. Lett. 110(8-9): 331-335 (2010)
2000 – 2009
- 2009
- [j25]Daniel H. Huson, Regula Rupp, Vincent Berry, Philippe Gambette, Christophe Paul:
Computing galled networks from real data. Bioinform. 25(12) (2009) - [j24]Suparna Mitra, Bernhard Klar, Daniel H. Huson:
Visual and statistical comparison of metagenomes. Bioinform. 25(15): 1849-1855 (2009) - [j23]Daniel H. Huson, Daniel C. Richter, Suparna Mitra, Alexander F. Auch, Stephan C. Schuster:
Methods for comparative metagenomics. BMC Bioinform. 10(S-1) (2009) - [j22]Daniel H. Huson, Vincent Moulton, Mike A. Steel:
Special Section: Phylogenetics. IEEE ACM Trans. Comput. Biol. Bioinform. 6(1): 4-6 (2009) - [j21]Daniel H. Huson:
Drawing Rooted Phylogenetic Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 6(1): 103-109 (2009) - 2008
- [j20]Philippe Gambette, Daniel H. Huson:
Improved Layout of Phylogenetic Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 5(3): 472-479 (2008) - [c21]Daniel H. Huson, Regula Rupp:
Summarizing Multiple Gene Trees Using Cluster Networks. WABI 2008: 296-305 - 2007
- [j19]Jan P. Meier-Kolthoff, Alexander F. Auch, Daniel H. Huson, Markus Göker:
COPYCAT : cophylogenetic analysis tool. Bioinform. 23(7): 898-900 (2007) - [j18]Daniel C. Richter, Stephan C. Schuster, Daniel H. Huson:
OSLay: optimal syntenic layout of unfinished assemblies. Bioinform. 23(13): 1573-1579 (2007) - [j17]Daniel H. Huson, Daniel C. Richter, Christian Rausch, Tobias Dezulian, Markus Franz, Regula Rupp:
Dendroscope: An interactive viewer for large phylogenetic trees. BMC Bioinform. 8 (2007) - [c20]Daniel H. Huson, Alexander F. Auch, Qi Ji, Stephan C. Schuster:
etagenome Analysis using Megan. APBC 2007: 7-16 - [c19]Daniel H. Huson, Tobias H. Klöpper:
Beyond Galled Trees - Decomposition and Computation of Galled Networks. RECOMB 2007: 211-225 - 2006
- [j16]Tobias Dezulian, Michael Remmert, Javier F. Palatnik, Detlef Weigel, Daniel H. Huson:
Identification of plant microRNA homologs. Bioinform. 22(3): 359-360 (2006) - [j15]Tobias Dezulian, Martin H. Schaefer, Roland Wiese, Detlef Weigel, Daniel H. Huson:
CrossLink: visualization and exploration of sequence relationships between (micro) RNAs. Nucleic Acids Res. 34(Web-Server-Issue): 400-404 (2006) - [c18]Daniel H. Huson, Mike A. Steel, Jim Whitfield:
Reducing Distortion in Phylogenetic Networks. WABI 2006: 150-161 - [e2]Daniel H. Huson, Oliver Kohlbacher, Andrei N. Lupas, Kay Nieselt, Andreas Zell:
German Conference on Bioinformatics GCB 2006, 19.09. 2006 - 22.09. 2006 in Tübingen, Germany. LNI P-83, GI 2006, ISBN 978-3-88579-177-5 [contents] - 2005
- [j14]Stefan R. Henz, Daniel H. Huson, Alexander F. Auch, Kay Nieselt-Struwe, Stephan C. Schuster:
Whole-genome prokaryotic phylogeny. Bioinform. 21(10): 2329-2335 (2005) - [c17]Daniel H. Huson, Tobias H. Klöpper:
Computing recombination networks from binary sequences. ECCB/JBI 2005: 165 - [c16]Daniel H. Huson, Tobias H. Klöpper, Peter J. Lockhart, Mike A. Steel:
Reconstruction of Reticulate Networks from Gene Trees. RECOMB 2005: 233-249 - [e1]Aoife McLysaght, Daniel H. Huson:
Comparative Genomics, RECOMB 2005 International Workshop, RCG 2005, Dublin, Ireland, September 18-20, 2005, Proceedings. Lecture Notes in Computer Science 3678, Springer 2005, ISBN 3-540-28932-1 [contents] - 2004
- [j13]Daniel H. Huson, Mike A. Steel:
Phylogenetic trees based on gene content. Bioinform. 20(13): 2044-2049 (2004) - [j12]Kristoffer Forslund, Daniel H. Huson, Vincent Moulton:
VisRD--visual recombination detection. Bioinform. 20(18): 3654-3655 (2004) - [j11]Andreas W. M. Dress, Daniel H. Huson:
Constructing Splits Graphs. IEEE ACM Trans. Comput. Biol. Bioinform. 1(3): 109-115 (2004) - [j10]Daniel H. Huson, Tobias Dezulian, Tobias H. Klöpper, Mike A. Steel:
Phylogenetic Super-Networks from Partial Trees. IEEE ACM Trans. Comput. Biol. Bioinform. 1(4): 151-158 (2004) - [c15]Olaf Delgado-Friedrichs, Aaron L. Halpern, Ross Lippert, Christian Rausch, Stephan C. Schuster, Daniel H. Huson:
Syntenic Layout of Two Assemblies of Related Genomes. German Conference on Bioinformatics 2004: 3-12 - [c14]Daniel H. Huson, Tobias Dezulian, Tobias H. Klöpper, Mike A. Steel:
Phylogenetic Super-networks from Partial Trees. WABI 2004: 388-399 - 2003
- [c13]Olaf Delgado-Friedrichs, Tobias Dezulian, Daniel H. Huson:
A meta-viewer for biomolecular data. GI Jahrestagung (1) 2003: 375-380 - [c12]David Bryant, Daniel H. Huson, Tobias H. Klöpper, Kay Nieselt-Struwe:
Distance Corrections on Recombinant Sequences. WABI 2003: 271-286 - 2002
- [j9]Daniel H. Huson, Knut Reinert, Eugene W. Myers:
The greedy path-merging algorithm for contig scaffolding. J. ACM 49(5): 603-615 (2002) - [c11]Aaron L. Halpern, Daniel H. Huson, Knut Reinert:
Segment Match Refinement and Applications. WABI 2002: 126-139 - 2001
- [c10]Daniel H. Huson, Knut Reinert, Saul A. Kravitz, Karin A. Remington, Arthur L. Delcher, Ian M. Dew, Michael Flanigan, Aaron L. Halpern, Zhongwu Lai, Clark M. Mobarry, Granger G. Sutton, Eugene W. Myers:
Design of a compartmentalized shotgun assembler for the human genome. ISMB (Supplement of Bioinformatics) 2001: 132-139 - [c9]Russell J. Turner, Kabir Chaturvedi, Nathan Edwards, Daniel P. Fasulo, Aaron L. Halpern, Daniel H. Huson, Oliver Kohlbacher, Jason R. Miller, Knut Reinert, Karin A. Remington, Russell Schwartz, Brian Walenz, Shibu Yooseph, Sorin Istrail:
Visualization challenges for a new cyberpharmaceutical computing paradigm. IEEE Symposium on Parallel and Large-Data Visualization and Graphics 2001: 7-18 - [c8]Daniel H. Huson, Knut Reinert, Eugene W. Myers:
The greedy path-merging algorithm for sequence assembly. RECOMB 2001: 157-163 - [c7]Daniel H. Huson, Aaron L. Halpern, Zhongwu Lai, Eugene W. Myers, Knut Reinert, Granger G. Sutton:
Comparing Assemblies Using Fragments and Mate-Pairs. WABI 2001: 294-306 - 2000
- [j8]Olaf Delgado-Friedrichs, Daniel H. Huson:
4-Regular Vertex-Transitive Tilings of E3. Discret. Comput. Geom. 24(2-3): 279-292 (2000) - [c6]Vineet Bafna, Daniel H. Huson:
The Conserved Exon Method for Gene Finding. ISMB 2000: 3-12
1990 – 1999
- 1999
- [j7]Olaf Delgado-Friedrichs, Daniel H. Huson:
Tiling Space by Platonic Solids, I. Discret. Comput. Geom. 21(2): 299-315 (1999) - [j6]Daniel H. Huson, Scott Nettles, Tandy J. Warnow:
Disk-Covering, a Fast-Converging Method for Phylogenetic Tree Reconstruction. J. Comput. Biol. 6(3/4): 369-386 (1999) - [j5]Daniel H. Huson, Scott Nettles, Kenneth Rice, Tandy J. Warnow, Shibu Yooseph:
Hybrid Tree Reconstruction Methods. ACM J. Exp. Algorithmics 4: 5 (1999) - [c5]Daniel H. Huson, Lisa Vawter, Tandy J. Warnow:
Solving Large Scale Phylogenetic Problems using DCM2. ISMB 1999: 118-129 - [c4]Daniel H. Huson, Scott Nettles, Tandy J. Warnow:
Obtaining highly accurate topology estimates of evolutionary trees from very short sequences. RECOMB 1999: 198-207 - [c3]Daniel H. Huson, Kelly Ann Smith, Tandy J. Warnow:
Estimating Large Distances in Phylogenetic Reconstruction. WAE 1999: 272-286 - 1998
- [j4]Daniel H. Huson:
SplitsTree: analyzing and visualizing evolutionary data. Bioinform. 14(1): 68-73 (1998) - [j3]Nikolai P. Dolbilin, Andreas W. M. Dress, Daniel H. Huson:
Two Finiteness Theorems for Periodic Tilings of d-Dimensional Euclidean Space. Discret. Comput. Geom. 20(2): 143-153 (1998) - [c2]Daniel H. Huson, Scott Nettles, Kenneth Rice, Tandy J. Warnow, Shibu Yooseph:
Hybrid Tree Reconstruction Methods. WAE 1998: 179-192 - 1996
- [j2]Andreas W. M. Dress, Daniel H. Huson, Vincent Moulton:
Analyzing and Visualizing Sequence and Distance Data Using SplitsTree. Discret. Appl. Math. 71(1-3): 95-109 (1996) - 1995
- [c1]Daniel H. Huson:
Visualization of Periodic Tilings. VisMath 1995: 135-139 - 1992
- [j1]Reinhard Franz, Daniel H. Huson:
The Classification of Quasi-Regular Polyhedra of Genus 2. Discret. Comput. Geom. 7: 347-357 (1992)
Coauthor Index
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