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Trevor A. Cohen
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2020 – today
- 2024
[j51]Zhiyong Lu
, Yifan Peng, Trevor Cohen, Marzyeh Ghassemi, Chunhua Weng, Shubo Tian:
Large language models in biomedicine and health: current research landscape and future directions. J. Am. Medical Informatics Assoc. 31(9): 1801-1811 (2024)- [j50]Satya S. Sahoo, Joseph M. Plasek, Hua Xu, Özlem Uzuner, Trevor Cohen, Meliha Yetisgen, Hongfang Liu, Stéphane M. Meystre, Yanshan Wang:
Large language models for biomedicine: foundations, opportunities, challenges, and best practices. J. Am. Medical Informatics Assoc. 31(9): 2114-2124 (2024) - [j49]Yue Guo, Wei Qiu, Gondy Leroy, Sheng Wang, Trevor Cohen:
Retrieval augmentation of large language models for lay language generation. J. Biomed. Informatics 149: 104580 (2024) - [j48]Changye Li, Weizhe Xu, Trevor Cohen, Serguei Pakhomov:
Useful blunders: Can automated speech recognition errors improve downstream dementia classification? J. Biomed. Informatics 150: 104598 (2024) - [j47]Oliver J. Bear Don't Walk IV, Amandalynne Paullada, Avery R. Everhart, Reggie Casanova-Perez, Trevor Cohen, Tiffany C. Veinot:
Opportunities for incorporating intersectionality into biomedical informatics. J. Biomed. Informatics 154: 104653 (2024) - [c73]Changye Li, Zhecheng Sheng, Trevor Cohen, Serguei Pakhomov:
Too Big to Fail: Larger Language Models are Disproportionately Resilient to Induction of Dementia-Related Linguistic Anomalies. ACL (Findings) 2024: 6363-6377 - [c72]Yue Guo, Tal August, Gondy Leroy, Trevor Cohen, Lucy Lu Wang:
APPLS: Evaluating Evaluation Metrics for Plain Language Summarization. EMNLP 2024: 9194-9211 - [c71]Yue Guo, Joseph Chee Chang, Maria Antoniak, Erin Bransom, Trevor Cohen, Lucy Lu Wang, Tal August:
Personalized Jargon Identification for Enhanced Interdisciplinary Communication. NAACL-HLT 2024: 4535-4550 - [i21]William R. Kearns, Jessica Bertram, Myra Divina, Lauren Kemp, Yinzhou Wang, Alex Marin, Trevor Cohen, Weichao Yuwen:
Bridging the Skills Gap: Evaluating an AI-Assisted Provider Platform to Support Care Providers with Empathetic Delivery of Protocolized Therapy. CoRR abs/2401.03631 (2024) - [i20]Changye Li, Weizhe Xu, Trevor Cohen, Serguei Pakhomov:
Useful Blunders: Can Automated Speech Recognition Errors Improve Downstream Dementia Classification? CoRR abs/2401.05551 (2024) - [i19]Changye Li, Zhecheng Sheng, Trevor Cohen, Serguei Pakhomov:
Too Big to Fail: Larger Language Models are Disproportionately Resilient to Induction of Dementia-Related Linguistic Anomalies. CoRR abs/2406.02830 (2024) - [i18]Changye Li, Trevor Cohen, Serguei Pakhomov:
Reexamining Racial Disparities in Automatic Speech Recognition Performance: The Role of Confounding by Provenance. CoRR abs/2407.13982 (2024) - [i17]Feng Chen, Manas Satish Bedmutha, Ray-Yuan Chung, Janice Sabin, Wanda Pratt, Brian R Wood, Nadir Weibel, Andrea L. Hartzler, Trevor Cohen:
Toward Automated Detection of Biased Social Signals from the Content of Clinical Conversations. CoRR abs/2407.17477 (2024) - [i16]Daniil Filienko, Yinzhou Wang, Caroline El Jazmi, Serena Xie, Trevor Cohen, Martine De Cock, Weichao Yuwen:
Toward Large Language Models as a Therapeutic Tool: Comparing Prompting Techniques to Improve GPT-Delivered Problem-Solving Therapy. CoRR abs/2409.00112 (2024) - 2023
- [j46]Weichen Wang, Weizhe Xu, Ayesha Chander, Subigya Nepal, Benjamin Buck, Serguei Pakhomov, Trevor Cohen, Dror Ben-Zeev, Andrew Campbell:
The Power of Speech in the Wild: Discriminative Power of Daily Voice Diaries in Understanding Auditory Verbal Hallucinations Using Deep Learning. Proc. ACM Interact. Mob. Wearable Ubiquitous Technol. 7(3): 133:1-133:29 (2023) - [j45]Arvind Pillai, Subigya Kumar Nepal, Weichen Wang, Matthew Nemesure, Michael V. Heinz, George D. Price, Damien Lekkas, Amanda C. Collins, Tess Griffin, Benjamin Buck, Sarah Masud Preum, Trevor Cohen, Nicholas C. Jacobson, Dror Ben-Zeev, Andrew T. Campbell:
Investigating Generalizability of Speech-based Suicidal Ideation Detection Using Mobile Phones. Proc. ACM Interact. Mob. Wearable Ubiquitous Technol. 7(4): 174:1-174:38 (2023) - [j44]Hannah A. Burkhardt, Xiruo Ding, Amanda Kerbrat, Katherine Anne Comtois, Trevor Cohen:
From benchmark to bedside: transfer learning from social media to patient-provider text messages for suicide risk prediction. J. Am. Medical Informatics Assoc. 30(6): 1068-1078 (2023) - [j43]Tavleen Singh, Kirk Roberts, Trevor Cohen, Nathan K. Cobb, Amy Franklin, Sahiti Myneni:
Discerning conversational context in online health communities for personalized digital behavior change solutions using Pragmatics to Reveal Intent in Social Media (PRISM) framework. J. Biomed. Informatics 140: 104324 (2023) - [j42]Chethan Jujjavarapu, Pradeep Suri, Vikas Pejaver, Janna Friedly, Laura S. Gold, Eric Meier, Trevor Cohen, Sean D. Mooney, Patrick J. Heagerty, Jeffrey G. Jarvik:
Predicting decompression surgery by applying multimodal deep learning to patients' structured and unstructured health data. BMC Medical Informatics Decis. Mak. 23(1): 2 (2023) - [i15]Changye Li, Trevor Cohen, Martin Michalowski, Serguei Pakhomov:
TRESTLE: Toolkit for Reproducible Execution of Speech, Text and Language Experiments. CoRR abs/2302.07322 (2023) - [i14]Yue Guo, Tal August, Gondy Leroy, Trevor Cohen, Lucy Lu Wang:
APPLS: A Meta-evaluation Testbed for Plain Language Summarization. CoRR abs/2305.14341 (2023) - [i13]Xiruo Ding, Zhecheng Sheng, Meliha Yetisgen, Serguei Pakhomov, Trevor Cohen:
Backdoor Adjustment of Confounding by Provenance for Robust Text Classification of Multi-institutional Clinical Notes. CoRR abs/2310.02451 (2023) - [i12]Xinyang Ren, Hannah A. Burkhardt, Patricia A. Areán, Thomas D. Hull, Trevor Cohen:
Deep Representations of First-person Pronouns for Prediction of Depression Symptom Severity. CoRR abs/2310.03232 (2023) - [i11]Yue Guo, Joseph Chee Chang, Maria Antoniak, Erin Bransom, Trevor Cohen, Lucy Lu Wang, Tal August:
Personalized Jargon Identification for Enhanced Interdisciplinary Communication. CoRR abs/2311.09481 (2023) - [i10]Xiruo Ding, Zhecheng Sheng, Brian Hur, Feng Chen, Serguei V. S. Pakhomov, Trevor Cohen:
Enhancing Robustness of Foundation Model Representations under Provenance-related Distribution Shifts. CoRR abs/2312.05435 (2023) - 2022
- [j41]Weizhe Xu, Weichen Wang, Jake Portanova, Ayesha Chander, Andrew Campbell, Serguei Pakhomov, Dror Ben-Zeev, Trevor Cohen:
Fully automated detection of formal thought disorder with Time-series Augmented Representations for Detection of Incoherent Speech (TARDIS). J. Biomed. Informatics 126: 103998 (2022) - [c70]Changye Li, David S. Knopman, Weizhe Xu, Trevor Cohen, Serguei Pakhomov:
GPT-D: Inducing Dementia-related Linguistic Anomalies by Deliberate Degradation of Artificial Neural Language Models. ACL (1) 2022: 1866-1877 - [c69]Hannah A. Burkhardt, Megan Laine, Amanda Kerbrat, Trevor Cohen, Kate Comtois, Andrea L. Hartzler:
Identifying opportunities for informatics-supported suicide prevention: the case of Caring Contacts. AMIA 2022 - [c68]YiFan Wu, Justin Mower, Xiruo Ding, Oliver Li, Devika Subramanian, Trevor Cohen:
Predicting Drug Blood-Brain Barrier Penetration with Adverse Event Report Embeddings. AMIA 2022 - [c67]Xiruo Ding, Kevin Lybarger, Justin Tauscher, Trevor Cohen:
Improving Classification of Infrequent Cognitive Distortions: Domain-Specific Model vs. Data Augmentation. NAACL-HLT (Student Research Workshop) 2022: 68-75 - [i9]Changye Li, David S. Knopman, Weizhe Xu, Trevor Cohen, Serguei Pakhomov:
GPT-D: Inducing Dementia-related Linguistic Anomalies by Deliberate Degradation of Artificial Neural Language Models. CoRR abs/2203.13397 (2022) - [i8]Yue Guo, Wei Qiu, Gondy Leroy, Sheng Wang, Trevor Cohen:
CELLS: A Parallel Corpus for Biomedical Lay Language Generation. CoRR abs/2211.03818 (2022) - [i7]Changye Li, Trevor Cohen, Serguei Pakhomov:
The Far Side of Failure: Investigating the Impact of Speech Recognition Errors on Subsequent Dementia Classification. CoRR abs/2211.07430 (2022) - 2021
- [j40]Yue Guo, Changye Li, Carol Roan, Serguei Pakhomov, Trevor Cohen:
Crossing the "Cookie Theft" Corpus Chasm: Applying What BERT Learns From Outside Data to the ADReSS Challenge Dementia Detection Task. Frontiers Comput. Sci. 3: 642517 (2021) - [j39]Dominic Widdows, Kirsty Kitto, Trevor Cohen:
Quantum Mathematics in Artificial Intelligence. J. Artif. Intell. Res. 72: 1307-1341 (2021) - [j38]Scott A. Malec, Peng Wei, Elmer V. Bernstam, Richard D. Boyce, Trevor Cohen:
Using computable knowledge mined from the literature to elucidate confounders for EHR-based pharmacovigilance. J. Biomed. Informatics 117: 103719 (2021) - [j37]Xiruo Ding, Justin Mower, Devika Subramanian, Trevor Cohen:
Augmenting aer2vec: Enriching distributed representations of adverse event report data with orthographic and lexical information. J. Biomed. Informatics 119: 103833 (2021) - [c66]Yue Guo, Wei Qiu, Yizhong Wang, Trevor Cohen:
Automated Lay Language Summarization of Biomedical Scientific Reviews. AAAI 2021: 160-168 - [c65]Hannah A. Burkhardt, George Alexopoulos, Michael D. Pullmann, Thomas D. Hull, Patricia A. Areán, Trevor A. Cohen:
Linguistic indicators of Behavioral Activation in text-based therapy sessions anticipate changes in depression symptomatology. AMIA 2021 - [c64]Tavleen Singh, Nathan K. Cobb, Trevor Cohen, Sahiti Myneni:
Transitions Between Electronic and Combustible Cigarettes: A Mixed Methods Analysis of Peer Interactions in an Online Community for Tobacco Cessation. MIE 2021: 1004-1008 - [i6]Dominic Widdows, Kirsty Kitto, Trevor Cohen:
Quantum Mathematics in Artificial Intelligence. CoRR abs/2101.04255 (2021) - [i5]Dominic Widdows, Kristen Howell, Trevor Cohen:
Should Semantic Vector Composition be Explicit? Can it be Linear. CoRR abs/2104.06555 (2021) - 2020
- [j36]Jean Louis Raisaro, Francesco Marino, Juan Ramón Troncoso-Pastoriza, Raphaelle Beau-Lejdstrom, Riccardo Bellazzi, Robert Murphy, Elmer V. Bernstam, Henry Wang, Mauro Bucalo, Yong Chen, Assaf Gottlieb, Arif Ozgun Harmanci, Miran Kim, Yejin Kim, Jeffrey G. Klann, Catherine Klersy, Bradley A. Malin, Marie Méan, Fabian Prasser, Luigia Scudeller, Ali Torkamani, Julien Vaucher, Mamta Puppala, Stephen T. C. Wong, Milana Frenkel-Morgenstern, Hua Xu, Baba Maiyaki Musa, Abdulrazaq G. Habib, Trevor Cohen, Adam B. Wilcox, Hamisu M. Salihu, Heidi Sofia, Xiaoqian Jiang, Jean-Pierre Hubaux:
SCOR: A secure international informatics infrastructure to investigate COVID-19. J. Am. Medical Informatics Assoc. 27(11): 1721-1726 (2020) - [c63]Trevor Cohen, Serguei Pakhomov:
A Tale of Two Perplexities: Sensitivity of Neural Language Models to Lexical Retrieval Deficits in Dementia of the Alzheimer's Type. ACL 2020: 1946-1957 - [c62]Xiruo Ding, Trevor A. Cohen:
Retrofitting Vector Representations of Adverse Event Reporting Data to Structured Knowledge to Improve Pharmacovigilance Signal Detection. AMIA 2020 - [c61]Weizhe Xu, Jake Portanova, Ayesha Chander, Dror Ben-Zeev, Trevor A. Cohen:
The Centroid Cannot Hold: Comparing Sequential and Global Estimates of Coherence as Indicators of Formal Thought Disorder. AMIA 2020 - [c60]Amandalynne Paullada, Bethany Percha, Trevor Cohen:
Improving Biomedical Analogical Retrieval with Embedding of Structural Dependencies. BioNLP 2020: 38-48 - [i4]Trevor Cohen, Serguei Pakhomov:
A Tale of Two Perplexities: Sensitivity of Neural Language Models to Lexical Retrieval Deficits in Dementia of the Alzheimer's Type. CoRR abs/2005.03593 (2020) - [i3]Xiruo Ding, Trevor Cohen:
Retrofitting Vector Representations of Adverse Event Reporting Data to Structured Knowledge to Improve Pharmacovigilance Signal Detection. CoRR abs/2008.03340 (2020) - [i2]Yue Guo, Wei Qiu, Yizhong Wang, Trevor Cohen:
Automated Lay Language Summarization of Biomedical Scientific Reviews. CoRR abs/2012.12573 (2020)
2010 – 2019
- 2019
- [j35]Qiang Wei, Yukun Chen, Mandana Salimi, Joshua C. Denny, Qiaozhu Mei, Thomas A. Lasko, Qingxia Chen, Stephen Wu, Amy Franklin, Trevor Cohen, Hua Xu:
Cost-aware active learning for named entity recognition in clinical text. J. Am. Medical Informatics Assoc. 26(11): 1314-1322 (2019) - [j34]Safa Fathiamini, Amber M. Johnson, Jia Zeng, Vijaykumar Holla, Nora S. Sanchez, Funda Meric-Bernstam, Elmer V. Bernstam, Trevor Cohen:
Rapamycin-mTOR+BRAF=? Using relational similarity to find therapeutically relevant drug-gene relationships in unstructured text. J. Biomed. Informatics 90 (2019) - [c59]Hannah A. Burkhardt, Devika Subramanian, Justin Mower, Trevor A. Cohen:
Predicting Adverse Drug-Drug Interactions with Neural Embedding of Semantic Predications. AMIA 2019 - [c58]Justin Mower, Trevor A. Cohen, Devika Subramanian:
Complementing Observational Signal with Distributed Representations for Drug Side-effect Prediction. AMIA 2019 - [c57]Jake Portanova, Nathan Murray, Justin Mower, Devika Subramanian, Trevor A. Cohen:
aer2vec: Distributed Representations of Adverse Event Reporting System Data as a Means to Identify Drug/Side-Effect Associations. AMIA 2019 - 2018
- [j33]Xiaoling Chen, Anupama E. Gururaj, Ibrahim Burak Özyurt, Ruiling Liu, Ergin Soysal, Trevor Cohen, Firat Tiryaki, Yueling Li, Nansu Zong, Min Jiang, Deevakar Rogith, Mandana Salimi, Hyeon-Eui Kim, Philippe Rocca-Serra, Alejandra N. González-Beltrán, Claudiu Farcas, Todd Johnson, Ronald Margolis, George Alter, Susanna-Assunta Sansone, Ian Fore, Lucila Ohno-Machado, Jeffrey S. Grethe, Hua Xu:
DataMed - an open source discovery index for finding biomedical datasets. J. Am. Medical Informatics Assoc. 25(3): 300-308 (2018) - [j32]Justin Mower, Devika Subramanian, Trevor Cohen:
Learning predictive models of drug side-effect relationships from distributed representations of literature-derived semantic predications. J. Am. Medical Informatics Assoc. 25(10): 1339-1350 (2018) - [c56]Qiang Wei, Amy Franklin, Trevor Cohen, Hua Xu:
Clinical text annotation - what factors are associated with the cost of time? AMIA 2018 - [c55]Trevor Cohen, Dominic Widdows:
Bringing Order to Neural Word Embeddings with Embeddings Augmented by Random Permutations (EARP). CoNLL 2018: 465-475 - [c54]Vishnupriya Sridharan, Trevor Cohen, Nathan K. Cobb, Sahiti Myneni:
The Portrayal of Quit Emotions: Content-Sensitive Analysis of Peer Interactions in an Online Community for Smoking Cessation. SBP-BRiMS 2018: 253-262 - 2017
- [j31]Trevor Cohen, Kirk Roberts, Anupama E. Gururaj, Xiaoling Chen, Saeid Pournejati, George Alter, William R. Hersh, Dina Demner-Fushman, Lucila Ohno-Machado, Hua Xu:
A publicly available benchmark for biomedical dataset retrieval: the reference standard for the 2016 bioCADDIE dataset retrieval challenge. Database J. Biol. Databases Curation 2017: bax061 (2017) - [j30]Kirk Roberts, Anupama E. Gururaj, Xiaoling Chen, Saeid Pournejati, William R. Hersh, Dina Demner-Fushman, Lucila Ohno-Machado, Trevor Cohen, Hua Xu:
Information retrieval for biomedical datasets: the 2016 bioCADDIE dataset retrieval challenge. Database J. Biol. Databases Curation 2017: bax068 (2017) - [j29]Joanna Abraham, Thomas George Kannampallil, Vignesh Srinivasan, William L. Galanter, Gail Tagney, Trevor Cohen:
Measuring content overlap during handoff communication using distributional semantics: An exploratory study. J. Biomed. Informatics 65: 132-144 (2017) - [j28]Trevor Cohen, Dominic Widdows:
Embedding of semantic predications. J. Biomed. Informatics 68: 150-166 (2017) - [j27]Muhammad Amith, Rachel Cunningham, Lara S. Savas, Julie Boom, Roger W. Schvaneveldt, Cui Tao, Trevor Cohen:
Using Pathfinder networks to discover alignment between expert and consumer conceptual knowledge from online vaccine content. J. Biomed. Informatics 74: 33-45 (2017) - [j26]Yukun Chen, Thomas A. Lasko, Qiaozhu Mei, Qingxia Chen, Sungrim Moon, Jingqi Wang, Ky Nguyen, Tolulola Dawodu, Trevor Cohen, Joshua C. Denny, Hua Xu:
An active learning-enabled annotation system for clinical named entity recognition. BMC Medical Informatics Decis. Mak. 17(2): 35-44 (2017) - [c53]Kirk Roberts, Anupama E. Gururaj, Xiaoling Chen, Saeid Pournejati, Trevor Cohen, William R. Hersh, Dina Demner-Fushman, Lucila Ohno-Machado, Hua Xu:
Information Retrieval for Biomedical Datasets: The 2016 bioCADDIE Challenge. AMIA 2017 - [c52]Zhiguo Yu, Byron C. Wallace, Todd R. Johnson, Trevor Cohen:
Retrofitting Concept Vector Representations of Medical Concepts to Improve Estimates of Semantic Similarity and Relatedness. MedInfo 2017: 657-661 - [c51]Vishnupriya Sridharan, Trevor Cohen, Nathan K. Cobb, Sahiti Myneni:
Temporal Trends of Psychosociobehavioral Factors Underlying Tobacco Use: A Semi-Automated Exploratory Analysis of Peer-to-Peer Communication in a Health-Related Online Community. pHealth 2017: 123-129 - [i1]Zhiguo Yu, Byron C. Wallace, Todd R. Johnson, Trevor Cohen:
Retrofitting Concept Vector Representations of Medical Concepts to Improve Estimates of Semantic Similarity and Relatedness. CoRR abs/1709.07357 (2017) - 2016
- [j25]Jun Xu, Hee-Jin Lee, Jia Zeng, Yonghui Wu, Yaoyun Zhang, Liang-Chin Huang, Amber M. Johnson, Vijaykumar Holla, Ann M. Bailey, Trevor Cohen, Funda Meric-Bernstam, Elmer V. Bernstam, Hua Xu:
Extracting genetic alteration information for personalized cancer therapy from ClinicalTrials.gov. J. Am. Medical Informatics Assoc. 23(4): 750-757 (2016) - [j24]Safa Fathiamini, Amber M. Johnson, Jia Zeng, Alejandro Araya, Vijaykumar Holla, Ann M. Bailey, Beate Litzenburger, Nora S. Sanchez, Yekaterina Khotskaya, Hua Xu, Funda Meric-Bernstam, Elmer V. Bernstam, Trevor Cohen:
Automated identification of molecular effects of drugs (AIMED). J. Am. Medical Informatics Assoc. 23(4): 758-765 (2016) - [j23]Zhiguo Yu, Elmer V. Bernstam, Trevor Cohen, Byron C. Wallace, Todd R. Johnson:
Improving the utility of MeSH® terms using the TopicalMeSH representation. J. Biomed. Informatics 61: 77-86 (2016) - [c50]Zhiguo Yu, Trevor Cohen, Byron C. Wallace, Elmer V. Bernstam, Todd R. Johnson:
Retrofitting Word Vectors of MeSH Terms to Improve Semantic Similarity Measures. Louhi@EMNLP 2016: 43-51 - [c49]Jeffrey S. Grethe, Ibrahim Burak Özyurt, Hua Xu, Xiaoling Chen, Ruiling Liu, Ergin Soysal, Anupama E. Gururaj, Hyeon-Eui Kim, Trevor Cohen, Todd R. Johnson, Mandana Salimi, Saeid Pournejati, Min Jiang, Claudiu Farcas, Alejandra N. González-Beltrán, Philippe Rocca-Serra, Muhamamd F. Amith, Cui Tao, Ian Fore, Ronald Margolis, George Alter, Susanna-Assunta Sansone, Lucila Ohno-Machado:
A Scalable Dataset Indexing Infrastructure for the bioCADDIE Data Discovery System. AMIA 2016 - [c48]Scott A. Malec, Peng Wei, Hua Xu, Elmer V. Bernstam, Sahiti Myneni, Trevor Cohen:
Literature-Based Discovery of Confounding in Observational Clinical Data. AMIA 2016 - [c47]Sungrim Moon, Trevor Cohen, Hua Xu:
Semantic Relatedness and Similarity between Biomedical Concepts. AMIA 2016 - [c46]Justin Mower, Devika Subramanian, Ning Shang, Trevor Cohen:
Classification-by-Analogy: Using Vector Representations of Implicit Relationships to Identify Plausibly Causal Drug/Side-effect Relationships. AMIA 2016 - [c45]Sahiti Myneni, Nathan K. Cobb, Trevor Cohen:
Content-specific network analysis of peer-to-peer communication in an online community for smoking cessation. AMIA 2016 - [c44]Vishnupriya Sridharan, Trevor Cohen, Nathan K. Cobb, Sahiti Myneni:
Characterization of Temporal Semantic Shifts of Peer-to-peer Communication in a Health-related Online Community: Implications for Data-driven Health Promotion. AMIA 2016 - [c43]Vignesh Srinivasan, Thomas George Kannampallil, Trevor Cohen, Joanna Abraham:
Analyzing Similarities in Handoff Communication Content between Residents and Nurses. AMIA 2016 - [c42]Qiang Wei, Yukun Chen, Sungrim Moon, Trevor Cohen, Hua Xu:
A Study of Active Learning for Document Selection in Clinical Named Entity Recognition. AMIA 2016 - [c41]Hua Xu, Jeffrey S. Grethe, Xiaoling Chen, Ruiling Liu, Ergin Soysal, Anupama E. Gururaj, Yueling Li, Ibrahim Burak Özyurt, Hyeon-Eui Kim, Trevor Cohen, Todd R. Johnson, Mandana Salimi, Saeid Pournejati, Min Jiang, Claudiu Farcas, Alejandra N. González-Beltrán, Philippe Rocca-Serra, Muhamamd F. Amith, Cui Tao, Ian Fore, Ronald Margolis, George Alter, Susanna-Assunta Sansone, Lucila Ohno-Machado:
Development of DataMed, a Data Discovery Index Prototype by bioCADDIE: Laying the Groundwork for Biomedical Data Discovery. AMIA 2016 - [c40]Trevor Cohen, Dominic Widdows, Jason A. Vander Heiden, Namita T. Gupta, Steven H. Kleinstein:
Graded Vector Representations of Immunoglobulins Produced in Response to West Nile Virus. QI 2016: 135-148 - 2015
- [j22]Guocai Chen, Jieyi Zhao, Trevor Cohen, Cui Tao, Jingchun Sun, Hua Xu, Elmer V. Bernstam, Andrew Lawson, Jia Zeng, Amber M. Johnson, Vijaykumar Holla, Ann M. Bailey, Humberto Lara-Guerra, Beate Litzenburger, Funda Meric-Bernstam, W. Jim Zheng:
Using Ontology Fingerprints to disambiguate gene name entities in the biomedical literature. Database J. Biol. Databases Curation 2015 (2015) - [j21]Dominic Widdows, Trevor Cohen:
Reasoning with vectors: A continuous model for fast robust inference. Log. J. IGPL 23(2): 141-173 (2015) - [c39]Yukun Chen, Sungrim Moon, Thomas A. Lasko, Qiaozhu Mei, Jingqi Wang, Trevor Cohen, Qingxia Chen, Joshua C. Denny, Hua Xu:
Real Time Active Learning Study for Clinical Named Entity Recognition. AMIA 2015 - [c38]Peter V. Killoran, Swaroop Gantela, Sahiti Myneni, Khalid F. Almoosa, Bela Patel, Thomas George Kannampallil, Vimla L. Patel, Trevor Cohen:
Evaluating the Effects of Cognitive Support on Interpreting ICU Patient Data. AMIA 2015 - [c37]Zhiguo Yu, Elmer V. Bernstam, Trevor Cohen, Byron C. Wallace, Todd R. Johnson:
Improving Retrieval of PubMed Articles Using the TopicalMeSH Representation. AMIA 2015 - [c36]Dominic Widdows, Trevor Cohen:
Graded Semantic Vectors: An Approach to Representing Graded Quantities in Generalized Quantum Models. QI 2015: 231-244 - [c35]Trevor Cohen, Dominic Widdows:
Embedding Probabilities in Predication Space with Hermitian Holographic Reduced Representations. QI 2015: 245-257 - 2014
- [j20]Venkata Vijaya Kumar Dalai, Sana Khalid, Dinesh Gottipati, Thomas George Kannampallil, Vineeth John, Brett Blatter, Vimla L. Patel, Trevor Cohen:
Evaluating the effects of cognitive support on psychiatric clinical comprehension. Artif. Intell. Medicine 62(2): 91-104 (2014) - [j19]Ning Shang, Hua Xu, Thomas C. Rindflesch, Trevor Cohen:
Identifying plausible adverse drug reactions using knowledge extracted from the literature. J. Biomed. Informatics 52: 293-310 (2014) - [c34]Safa Fathiamini, Amber M. Johnson, Vijaykumar Holla, Ann M. Bailey, Jia Zeng, Lauren Brusco, Funda Meric-Bernstam, Elmer V. Bernstam, Trevor Cohen:
Exploring the Use of SemRep Predications to Help Identify Secondary Drug Targets for Personalized Cancer Therapy. AMIA 2014 - [c33]Sungrim Moon, Trevor Cohen, Hua Xu:
A study of synonym extraction from clinical texts using semantic vector models. AMIA 2014 - [c32]Sahiti Myneni, Trevor Cohen:
Facilitating Visual Exploration of System-generated Reasoning Pathways underlying Drug-Side effect Relations. AMIA 2014 - [c31]Ning Shang, Hua Xu, Thomas C. Rindflesch, Trevor Cohen:
Identifying Plausible Adverse Drug Reactions Using Knowledge Extracted from the Literature. AMIA 2014 - [c30]Guocai Chen, Jieyi Zhao, Trevor Cohen, Cui Tao, Jingchun Sun, Hua Xu, Elmer V. Bernstam, Jia Zeng, Amber M. Johnson, Vijaykumar Holla, Ann Balley, Funda Meric-Bernstam, W. Jim Zheng:
Using Ontology Fingerprints to Disambiguate Gene Name Entities in the Biomedical Literature. ICBO 2014: 66 - [c29]Trevor Cohen, Dominic Widdows, Thomas C. Rindflesch:
Expansion-by-Analogy: A Vector Symbolic Approach to Semantic Search. QI 2014: 54-66 - 2013
- [j18]Thomas George Kannampallil, Amy Franklin, Rashmi Mishra, Khalid F. Almoosa, Trevor Cohen, Vimla L. Patel:
Understanding the nature of information seeking behavior in critical care: Implications for the design of health information technology. Artif. Intell. Medicine 57(1): 21-29 (2013) - [c28]Venkata Vijaya Kumar Dalai, Dinesh Gottipati, Thomas George Kannampallil, Trevor Cohen:
Characterizing the Effects of a Cognitive Support System for Psychiatric Clinical Comprehension Venkata V.K. Dalai, MBBS, MPH, Dinesh Gottipatti, MS. Thomas Kannampallil, MS. Vineeth John, MD, MBA. Trevor Cohen, MBChB, PhD. University of Texas School of Biomedical Informatics1. New York Academy of Medicine2. University of Texas Medical School at Houston3. AMIA 2013 - [c27]Safa Fathiamini, Trevor Cohen, Allison B. McCoy, Dean F. Sittig:
Reflective Random Indexing to Develop a Medication-Problem Knowledge Base. AMIA 2013 - [c26]Sungrim Moon, Bjoern-Toby Berster, Hua Xu, Trevor Cohen:
Word Sense Disambiguation of Clinical Abbreviations with Hyperdimensional Computing. AMIA 2013 - [c25]Sahiti Myneni, Amy Franklin, Nathan K. Cobb, Trevor Cohen:
Individual Attributes of Behavior Change in an Online Social Network. AMIA 2013 - [c24]Yaoyun Zhang, Trevor Cohen, Min Jiang, Buzhou Tang, Hua Xu:
Evaluation of Vector Space Models for Medical Disorders Information Retrieval. CLEF (Working Notes) 2013 - [c23]Sahiti Myneni, Nathan K. Cobb, Trevor Cohen:
Finding Meaning in Social Media: Content-based Social Network Analysis of QuitNet to Identify New Opportunities for Health Promotion. MedInfo 2013: 807-811 - [c22]Sahiti Myneni, M. Sriram Iyengar, Nathan K. Cobb, Trevor Cohen:
Identifying Persuasive Qualities of Decentralized Peer-to-Peer Online Social Networks in Public Health. PERSUASIVE 2013: 155-160 - [c21]Trevor Cohen, Dominic Widdows, Manuel Wahle, Roger W. Schvaneveldt:
Orthogonality and Orthography: Introducing Measured Distance into Semantic Space. QI 2013: 34-46 - 2012
- [j17]Jorge R. Herskovic, Devika Subramanian, Trevor Cohen, Pamela A. Bozzo-Silva, Charles F. Bearden, Elmer V. Bernstam:
Graph-based signal integration for high-throughput phenotyping. BMC Bioinform. 13(S-13): S2 (2012) - [j16]J. Caleb Goodwin, Todd R. Johnson, Trevor Cohen, Jorge R. Herskovic, Elmer V. Bernstam:
Focus on information retrieval: Predicting biomedical document access as a function of past use. J. Am. Medical Informatics Assoc. 19(3): 473-478 (2012) - [j15]Siddhartha Jonnalagadda, Trevor Cohen, Stephen T. Wu, Graciela Gonzalez:
Enhancing clinical concept extraction with distributional semantics. J. Biomed. Informatics 45(1): 129-140 (2012) - [j14]Trevor Cohen, Dominic Widdows, Roger W. Schvaneveldt, Peter Davies, Thomas C. Rindflesch:
Discovering discovery patterns with predication-based Semantic Indexing. J. Biomed. Informatics 45(6): 1049-1065 (2012) - [j13]Rachel M. Satter, Trevor Cohen, Pierina Ortiz, Kanav Kahol, James Mackenzie, Carol Olson, Mina Johnson, Vimla L. Patel:
Avatar-based simulation in the evaluation of diagnosis and management of mental health disorders in primary care. J. Biomed. Informatics 45(6): 1137-1150 (2012) - [c20]Bjoern-Toby Berster, Joshua Goodwin, Trevor Cohen:
Hyperdimensional Computing Approach to Word Sense Disambiguation. AMIA 2012 - [c19]Claire Loe, Trevor Cohen, Jiajie Zhang, Maria Fernandez, Amy Franklin:
Designing a Learning Technology for Community Health Workers. AMIA 2012 - [c18]Dean F. Sittig, Allison B. McCoy, Adam Wright, Amy Franklin, Trevor Cohen:
Reducing Cognitive Load: Exploring Knowledge Model-driven Clinical Information Displays. AMIA 2012 - [c17]Manuel Wahle, Dominic Widdows, Jorge R. Herskovic, Elmer V. Bernstam, Trevor Cohen:
Deterministic Binary Vectors for Efficient Automated Indexing of MEDLINE/PubMed Abstracts. AMIA 2012 - [c16]Trevor Cohen, Dominic Widdows, Roger W. Schvaneveldt, Thomas C. Rindflesch:
Discovery at a distance: Farther journeys in predication space. BIBM Workshops 2012: 218-225 - [c15]J. Caleb Goodwin, Trevor Cohen, Thomas C. Rindflesch:
Discovery by scent: Discovery browsing system based on the Information Foraging Theory. BIBM Workshops 2012: 232-239 - [c14]Dominic Widdows, Trevor Cohen:
Real, Complex, and Binary Semantic Vectors. QI 2012: 24-35 - [c13]Trevor Cohen, Dominic Widdows, Lance De Vine, Roger W. Schvaneveldt, Thomas C. Rindflesch:
Many Paths Lead to Discovery: Analogical Retrieval of Cancer Therapies. QI 2012: 90-101 - 2011
- [j12]Jorge R. Herskovic, Trevor Cohen, Devika Subramanian, M. Sriram Iyengar, Jack W. Smith, Elmer V. Bernstam:
MEDRank: Using graph-based concept ranking to index biomedical texts. Int. J. Medical Informatics 80(6): 431-441 (2011) - [j11]Vimla L. Patel, Trevor Cohen, Tripti Murarka, Joanne Olsen, Srujana Kagita, Sahiti Myneni, Timothy G. Buchman, Vafa Ghaemmaghami:
Recovery at the edge of error: Debunking the myth of the infallible expert. J. Biomed. Informatics 44(3): 413-424 (2011) - [j10]Mithra Vankipuram, Kanav Kahol, Trevor Cohen, Vimla L. Patel:
Toward automated workflow analysis and visualization in clinical environments. J. Biomed. Informatics 44(3): 432-440 (2011) - [j9]Thomas George Kannampallil, Zhe Li, Min Zhang, Trevor Cohen, David J. Robinson, Amy Franklin, Jiajie Zhang, Vimla L. Patel:
Making sense: Sensor-based investigation of clinician activities in complex critical care environments. J. Biomed. Informatics 44(3): 441-454 (2011) - [j8]Thomas George Kannampallil, Guido F. Schauer, Trevor Cohen, Vimla L. Patel:
Considering complexity in healthcare systems. J. Biomed. Informatics 44(6): 943-947 (2011) - [c12]Trevor Cohen, Dominic Widdows, Roger W. Schvaneveldt, Thomas C. Rindflesch:
Finding Schizophrenia's Prozac Emergent Relational Similarity in Predication Space. QI 2011: 48-59 - 2010
- [j7]Trevor Cohen, Roger W. Schvaneveldt, Dominic Widdows:
Reflective Random Indexing and indirect inference: A scalable method for discovery of implicit connections. J. Biomed. Informatics 43(2): 240-256 (2010) - [j6]Vidya Vasuki, Trevor Cohen:
Reflective random indexing for semi-automatic indexing of the biomedical literature. J. Biomed. Informatics 43(5): 694-700 (2010) - [c11]Trevor Cohen, Dominic Widdows, Roger W. Schvaneveldt, Thomas C. Rindflesch:
Logical Leaps and Quantum Connectives: Forging Paths through Predication Space. AAAI Fall Symposium: Quantum Informatics for Cognitive, Social, and Semantic Processes 2010 - [c10]Siddhartha Jonnalagadda, Robert Leaman, Trevor Cohen, Graciela Gonzalez:
A Distributional Semantics Approach to Simultaneous Recognition of Multiple Classes of Named Entities. CICLing 2010: 224-235 - [c9]Trevor Cohen, Roger W. Schvaneveldt:
The Trajectory of Scientific Discovery: Concept Co-Occurrence and Converging Semantic Distance. MedInfo 2010: 661-665 - [c8]Dominic Widdows, Trevor Cohen:
The Semantic Vectors Package: New Algorithms and Public Tools for Distributional Semantics. ICSC 2010: 9-15
2000 – 2009
- 2009
- [j5]Trevor Cohen, Dominic Widdows:
Empirical distributional semantics: Methods and biomedical applications. J. Biomed. Informatics 42(2): 390-405 (2009) - [c7]Trevor Cohen, Roger W. Schvaneveldt, Thomas C. Rindflesch:
Predication-based Semantic Indexing: Permutations as a Means to Encode Predications in Semantic Space. AMIA 2009 - [c6]Pallavi Shetty, Trevor Cohen, Bhavesh Patel, Vimla L. Patel:
The Cognitive Basis of Effective Team Performance: Features of Failure and Success in Simulated Cardiac Resuscitation. AMIA 2009 - [c5]Mithra Vankipuram, Kanav Kahol, Trevor Cohen, Vimla L. Patel:
Visualization and Analysis of Activities in Critical Care Environments. AMIA 2009 - [c4]Dominic Widdows, Trevor Cohen:
Semantic Vector Combinations and the Synoptic Gospels. QI 2009: 251-265 - 2008
- [j4]Trevor Cohen, Brett Blatter, Vimla L. Patel:
Simulating expert clinical comprehension: Adapting latent semantic analysis to accurately extract clinical concepts from psychiatric narrative. J. Biomed. Informatics 41(6): 1070-1087 (2008) - [c3]Trevor Cohen:
Exploring MEDLINE Space with Random Indexing and Pathfinder Networks. AMIA 2008 - 2007
- [j3]Trevor Cohen, Brett Blatter, Carlos Almeida, Vimla L. Patel:
Research Paper: Reevaluating Recovery: Perceived Violations and Preemptive Interventions on Emergency Psychiatry Rounds. J. Am. Medical Informatics Assoc. 14(3): 312-319 (2007) - 2006
- [j2]Trevor Cohen, Brett Blatter, Carlos Almeida, Edward H. Shortliffe, Vimla L. Patel:
A cognitive blueprint of collaboration in context: Distributed cognition in the psychiatric emergency department. Artif. Intell. Medicine 37(2): 73-83 (2006) - [j1]Pallav Sharda, Amar K. Das, Trevor Cohen, Vimla L. Patel:
Customizing clinical narratives for the electronic medical record interface using cognitive methods. Int. J. Medical Informatics 75(5): 346-368 (2006) - 2005
- [c2]Trevor Cohen, Brett Blatter, Vimla L. Patel:
Exploring dangerous neighborhoods: Latent Semantic Analysis and computing beyond the bounds of the familiar. AMIA 2005 - 2004
- [c1]Trevor Cohen, David Kaufman, Thomas White, Gerald Segal, Amy Bennett Staub, Vimla L. Patel, Molly T. Finnerty:
Cognitive Evaluation of an Innovative Psychiatric Clinical Knowledge Enhancement System. MedInfo 2004: 1295-1299
Coauthor Index
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