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    Malaria Parasite Detection in Thin Blood Smear Images Using Deep Learning

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    Rouf Ahmad
    This document presents a method for using deep learning to detect malaria parasites in thin blood smear images. It discusses using convolutional neural networks (CNNs) and residual networks to classify images into parasitized or uninfected classes. The methodology implements CNNs and ResNet on a dataset of over 27,000 blood smear images. Classification reports show the CNN achieving 89% accuracy and ResNet achieving 97% accuracy. Hardware and software requirements for running the deep learning models are also outlined. The study demonstrates that deep learning can effectively classify malaria in blood smear images.

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    Malaria Parasite Detection in Thin Blood Smear Images Using Deep Learning

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    Rouf Ahmad
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    This document presents a method for using deep learning to detect malaria parasites in thin blood smear images. It discusses using convolutional neural networks (CNNs) and residual networks to classify images into parasitized or uninfected classes. The methodology implements CNNs and ResNet on a dataset of over 27,000 blood smear images. Classification reports show the CNN achieving 89% accuracy and ResNet achieving 97% accuracy. Hardware and software requirements for running the deep learning models are also outlined. The study demonstrates that deep learning can effectively classify malaria in blood smear images.

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    This document presents a method for using deep learning to detect malaria parasites in thin blood smear images. It discusses using convolutional neural networks (CNNs) and residual networks to classify images into parasitized or uninfected classes. The methodology implements CNNs and ResNet on a dataset of over 27,000 blood smear images. Classification reports show the CNN achieving 89% accuracy and ResNet achieving 97% accuracy. Hardware and software requirements for running the deep learning models are also outlined. The study demonstrates that deep learning can effectively classify malaria in blood smear images.

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    18 views24 pages

    Malaria Parasite Detection in Thin Blood Smear Images Using Deep Learning

    Uploaded by

    Rouf Ahmad
    This document presents a method for using deep learning to detect malaria parasites in thin blood smear images. It discusses using convolutional neural networks (CNNs) and residual networks to classify images into parasitized or uninfected classes. The methodology implements CNNs and ResNet on a dataset of over 27,000 blood smear images. Classification reports show the CNN achieving 89% accuracy and ResNet achieving 97% accuracy. Hardware and software requirements for running the deep learning models are also outlined. The study demonstrates that deep learning can effectively classify malaria in blood smear images.

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    of 24

    MALARIA PARASITE DETECTION IN

    THIN BLOOD SMEAR IMAGES


    USING DEEP LEARNING

    PRESENTED BY:
    ROUF AHMAD TANTRAY
    1702CUKmr24
    (DEPARTMENT OF IT)
    Contents

    • Introduction
    • Bottleneck in Malaria Diagnosis
    • The Problem statement
    • Why Deep Learning
    • Dataset
    • Image Analysis
    • Methodologies
    • Implementations
    • Classification Reports
    • Hardware/Software Requirements
    • Conclusions
    • References
    Introduction

    • Malaria is a disease and is caused by the bites


    of infective female anopheles mosquito.
    • It is a vector-borne disease.
    • It is caused by the protozoan parasite of the
    genus plasmodium.
    • Generally, affects the human liver and Red
    Blood Cells.
    • Nearly 4 lakh deaths per year.
    Fig.1 shows indigenous malaria cases in countries
    and their status by 2017.(Source WHO ,malaria
    report 2018)
    A Bottleneck in Malaria Diagnosis

    • Microscopic examination of blood is the best


    known method for diagnosis of malaria. A
    patient’s blood is smeared on a glass slide and
    then stained with a contrasting agent that
    facilitates identification of parasites within
    RBCs. A trained clinician examines 20
    microscopic fields of view at 100 X
    magnification, counting RBCs that contain the
    parasite out of 5,000 cells(WHO protocol).
    The Problem Statement
    • Manually counting 5000 cells is a slow
    process. This can easily burden clinic staff,
    especially where outbreaks occur. Therefore, it
    is needed to determine how image analysis
    and machine learning could reduce the
    burden on clinicians and help prioritize
    patients.
    Why Deep Learning
    • It skips the feature computation step and
    sometimes even the segmentation step.
    • Deep learning does not require the design of
    handcrafted features.
    • New algorithms are able to diagnose disease
    more accurately than expert physicians.
    • To reduce the burden for microscopists in
    resource-constrained regions and improve
    diagnostic accuracy.
    Dataset
    The dataset consists of 27,588 images belonging
    to two separate classes:
    I. Parasitized: This implies that malaria is in the
    cell.
    II. Uninfected: Meaning there is no evidence of
    malaria in the cell.
    The dataset is provided by National Library of
    Medicine(NLM).The link is given
    https://ceb.nlm.nih.gov/repositories/malaria-
    datasets/
    Image Analysis
    Methodology
    Implementation with CNN
    Classification Report Using CNN
    Class Precision Recall F1-score Support

    0 0.92 0.80 0.86 30

    1 0.86 0.95 0.90 40

    Micro average 0.89 0.89 0.89 70

    Macro average 0.89 0.88 0.88 70

    Weighted 0.89 0.89 0.88 70


    average
    ResNet
    • They are residual networks.
    • It eases the training of networks which are
    substantially deeper.
    • Deeper CNN models are difficult to train.
    • It also performs better than CNN over larger
    number of features.
    Project Structure
    Methodology
    Implementation
    Graphical Representation
    Classification Report of ResNet

    Class Precision Recall F1-score Support

    Parasitized 0.98 0.96 0.97 2661

    Uninfected 0.96 0.98 0.97 2620

    Micro average 0.97 0.97 0.97 5281

    Macro average 0.97 0.97 0.97 5281

    Weighted avg 0.97 0.97 0.97 5281


    Software Requirements
    • Keras: Keras is a deep learning framework.
    Installing Keras with the TensorFlow backend.
    • NumPy & Scikit-learn: If you know the Keras
    installation procedure, these packages for
    numerical processing and machine learning will be
    installed along with it.
    • Matplotlib: The most popular plotting tool for
    Python. Once you have your Keras environment
    ready and active, you can install via pip install
    matplotlib.
    • imutils: package of image processing and deep
    learning convenience functions can be installed via
    Hardware Requirements
    • Requirement of higher processors like i5 and
    i7.
    • 8GB RAM needs to be installed.
    Conclusions
    • This study has shown that malaria parasites can be effectively
    recognized on thin blood smears using a Convolutional Neural
    Network (CNN) and Residual Networks.
    • The end goal of this project is to develop a framework that
    can help researchers to automatically classify cells into 2
    classes i.e. Either belongs to infected or un-infected from a
    field of view image and identify features differentiating the
    infected stages.
    References

    • WHO. Malaria microscopy quality assurance manual-version 2. World Health


    Organization; 2016. World malaria report 2016. World Health Organization; 2016.
    3. Tek FB, Dempste.
    • Z. Liang, A. Powell, I. Ersoy, M. Poostchi, K. Silamut,K. Palaniappan, P. Guo, M. A.
    Hossain, A. Sameer, R. J.Maude, J. X. Huang, S. Jaeger, and G. Thoma, Cnn-
    basedimage analysis for malaria diagnosis, in: 2016 IEEE InternationalConference
    on Bioinformatics and Biomedicine 1(BIBM), (Dec 2016), pp. 493–496
    • Mahdieh Poostchi, Kamolrat Silamut, Richard Maude, Stefan Jaeger, George
    Thoma, Image analysis and machine learning for detecting malaria, Translational
    Research (2018), https://doi.org/10.1016/j.trsl.2017.12.004.
    • G. Gopakumar, V. K. Jagannadh, S. S. Gorthi, andG. R. K. S. Subrahmanyam, Journal
    of Microscopy 261(3),307–319 (2016)
    • Bibin D, Nair MS, Punitha P. Malaria parasite detection from peripheral blood
    smear images using deep belief networks. Int J Appl Eng Res 2017;5:9099–108.
    THANK YOU

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