EMILY CORNELIUS RUHS

Grainger Bioinformatics Center

Field Museum of Natural History Phone: (269) 873-1245
1400 Lake Shore Drive Email: [email protected]
Chicago, IL, 60605 www.emilycorneliusruhs.weebly.com

FORMAL EDUCATION
2018 University of Wisconsin-Madison, Delta program
Certificate in Teaching, Research, and Learning
Advisors: Devin Wixon and Nick Balster
2013-2017 University of Wisconsin-Madison, PhD in Wildlife Ecology
Impacts of periodic energy constraints on chickadee (Poecile spp.) body mass, composition,
and immune function
Advisor: William Karasov
2011-2013 University of Georgia, MSc in Ecology
Interplay between energy reserves, parasitism, stress, and immunity in migrating songbirds
Advisors: Sonia Altizer and Andrew Davis
2007-2011 Michigan State University, B.S. in Zoology (Lyman Briggs College)
Elucidating the predictive role of leukocyte profiles for detection of Eastern Equine
Encephalomyelitis Encephalitis Virus in a wild passerine bird.
Advisor: Jennifer Owen

PROFESSIONAL APPOINTMENTS
1/2023 – Present Postdoctoral Research Scientist – Bioinformatics of Emerging Pathogens
Grainger Bioinformatics Center, The Field Museum of Natural History
Co-appointment: University of Chicago
PI: Dr. Cara Brook; co-PI Dr. Felix Grewe
10/2022 - Present Honorary Associate Fellow – Aquatic Sciences Center/Wisconsin Sea Grant
8/2021 – 1/2023 Postdoctoral scholar – Dr. Cara Brook, University of Chicago
3/2019 - 2/2021 Postdoctoral scholar – Drs. Marty Martin, Cynthia Downs, & Rays Jiang, University of
South Florida
11/2018-3/2019 Postdoctoral contractor – Dr. Erik Hofmeister, USGS, Climate change and wildlife health
research unit
8/2018-12/2018 Faculty assistant – Physiological Animal Ecology (FWE 401), Forest and Wildlife Ecology,
University of Wisconsin-Madison
1/2018-11/2018 Short-term researcher – Drs. François Vézina & Oliver Love, Université du Québec à
Rimouski

PUBLICATIONS
Referred journal articles (†indicates an invited submission, *undergraduate collaborator, **post-bac, or graduate
collaborator)

20. McMinds, R., R. Jiang, S. Adapa, E. Cornelius Ruhs, R.A. Munds, J. Leiding, C.J. Downs, and L.B. Martin. Bacterial
sepsis triggers stronger transcriptomic responses in larger primates. In press. Proc. of the Royal Society B.
19. Cornelius Ruhs, E., Wan Ni Chia, Randy Foo, Alison J. Peel, Yimei Li, H. Benjamin Larman, Aaron T. Irving,
Linfa Wang, and Cara E. Brook. Applications of Phip-Seq technology to broad serological profiling of bat
reservoirs for emerging zoonoses. Frontiers in Public Health. doi: fpubh.2023.1212018.
 Emily Cornelius Ruhs Curriculum vitae – April 2023 2

18. Anton, B**., E. Cornelius Ruhs, and G. Dehnert. 2023. Elucidating the effects of acute and chronic exposure to
2,4-Dichlorophenoxyacetic acid on fathead minnow (Pimephales promelas) innate immunity. Aquatic
Toxicology: 106571.
17. Hofmeister, E.K., E. Cornelius Ruhs, L. Fortini, M. Hopkins, L. Jones, K. Lafferty, J. Sleeman, O. LeDee. 2022.
Potential directions to manage wildlife health in climate change: Outcome of a workshop. EcoHealth. doi:
10.1007/s10393-022-01604-9.
16. Martin, L.B., E. Cornelius Ruhs, S. Oakey, and C.J. Downs. 2022. Leukocyte allometries in birds are
not affected by captivity. Journal of Experimental Zoology – Part A. doi: 10.1002/jez.2591.
15. Davidson, S., and E. Cornelius Ruhs. 2021. Understanding and protecting Arctic migrations in a changing
world. Animal Migration: 8(1), 56-64.
14. Cornelius Ruhs, E., O.P. Love, L. Drainville, and F. Vézina. 2021. No common pesticides detected in snow
buntings utilizing a farmland landscape in Eastern Québec. Avian Conservation and Ecology: 16(2), 26.
13. Cornelius Ruhs, E., D.J. Becker, S.J. Oakey**, O. Ogunsina*, M. Brock Fenton, N.B. Simmons, L.B. Martin, and C.J.
Downs. 2021. Body size shapes immune cell proportions in birds and non-volant mammals, but not bats.
Journal of Experimental Biology: 224, jeb241109.
12. Cornelius Ruhs, E., L.B. Martin, and C.J. Downs. 2020. The impacts of body mass on immune cell
concentrations in birds. Proceedings of the Royal Society B: 10.1098.
11. Jimenez, A.G, E. Cornelius Ruhs, K. Tobin*, K. Anderson*, and F. Vézina. 2020. Consequences of being
phenotypically mismatched with the environment: no evidence of oxidative stress in cold and warm
acclimated birds facing a cold spell. Journal of Experimental Biology 223: jeb218826.
10. Vézina, F., Cornelius Ruhs E, E. O’Connor*, and A.G. Jimenez. 2020. Consequences of being phenotypically
mismatched with the environment: rapid muscle ultrastructural changes in cold shocked black-capped
chickadees (Poecile atricapillus). American Journal of Physiology 318: R274-283.
9. Cornelius Ruhs E, F. Vézina, M. Walker**, and W. Karasov. 2019. Who pays the bill? The effects of increased
parental workload on parental and nestling condition. Journal of Ornithology 161: 275-288.
8. Cornelius Ruhs, E, D.M. Borden**, E. Pitman, and T. Dallas. 2019. Feather traits as indicators of condition and
quality of migrating songbirds. Wilson Journal of Ornithology 131(3): 693-701.
7. Cornelius Ruhs E, F. Vézina, and W. Karasov. 2018. Physiological and immune responses of free-living,
temperate birds provided a gradient of food supplementation. Physiological and Biochemical Zoology, special
issue on Ecoimmunology, doi: 10.1086/701389
6. †Cornelius, E., F. Vézina, L. Regimbald**, F. Hallot, M. Petit, O. Love, and W. Karasov. 2017. Chickadees faced
with unpredictable food increase fat reserves but certain components of their immune system decline.
Physiological and Biochemical Zoology 90(2): 190-200.
5. Dallas, T. and E.A. Cornelius. 2015. Co-extinction in a host-parasite network: identifying key hosts for
network stability. Nature Scientific Reports 5, 13185; doi: 10.1038/srep13185.
4. Cornelius, E.A., A.K. Davis, and S.M. Altizer. 2014. How important are hemoparasites to migratory songbirds?
Evaluating physiological measures and infection status in three Neotropical migrants during stopover.
Physiological and Biochemical Zoology 87(5): 719-728.
3. Owen, J.C., E.A. Cornelius, D. Arsnoe, and M.C. Garvin. 2013. Leukocyte response to Eastern Equine
Encephalomyelitis Encephalitis Virus in a wild passerine bird. Avian diseases 57(4): 744-749.
2. Davis, A.K. and E. Cornelius. 2013. Do infections lead to higher feather mite loads in birds? A test with
mycoplasmal conjunctivitis in house finches. The Auk 130(4): 708-714.
 Emily Cornelius Ruhs Curriculum vitae – April 2023 3

1. Davis, A.K., E.A. Cornelius, and D. Cox†. 2013. Tachinid parasitism in adult horned passalus beetles
(Odontotaenius disjunctus) at the Wormsloe Historic Site, Savannah, GA. Journal of Entomological Science
48(3): 255-257.
Referred case studies
1. Cornelius Ruhs, E. and C.J. Downs. 2021. Case Study: A delicate balance: resource allocation, immunity and
disease in birds. National Center for Case Study Teaching in Science. https://www.nsta.org/ncss-case-
study/delicate-balance
Published introductions
1. A.K. Davis and E. Cornelius Ruhs. 2019. A themed collection of research articles focused on stress physiology
of bird migration. Animal Migration. (not peer-reviewed)
Papers in late stages
1. Cornelius Ruhs, E., K.McFerrin, D.N. Jones, N.A.F. Ravelomanantsoa, R.K. Plowright, C.E. Brook. Volant
vertebrates have rapid GIT transit times relative to nonvolant vertebrates. In prep.
2. Cornelius Ruhs, E., … and C.E. Brook. Quantification of the seasonal reproductive cycle in three species of
Malagasy fruit bats with implications for viral and population dynamic. In prep.
3. Fake, K. ….. E. Cornelius Ruhs. Impacts of urbanization on the physiology of American Robins (Turdus
migratorus) in Chicagoland. In prep.
4. Milusich, E. E., E. Cornelius Ruhs, J. Gilbert, J. Hua, and G.K. Dehnert. Accumulation of PFAS in maple sap
across the Ceded Territories. In prep.

RESEARCH GRANTS AND FELLOWSHIPS

Active grants
2024 – present Grainger Research grants. Quantifying the health impacts of emerging and legacy contaminants on
an apex bird predator in the Great Lakes region. (PI; $10,000)
2023 – present The Field Museum, Grainger Bioinformatics Fellowship. Leveraging Field Museum
collections to gain insight into bat-virus coevolution. (PI; $150,000)
2022 – present United States Geological Survey, Water Resources Research Act. Collaborator. Quantifying PFAS
bioaccumulation and health impacts on economically important plants and animals associated
with aquatic ecosystems in the Ceded Territories. (Gavin Dehnert, PI; $500,000)
2022 – 12/2023 National Geographic, Meridian grant. Team member. Coding for conservation: quantitative
training for the next generation of environmental leaders in Madagascar. (Cara Brook, PI;
$25,000)
2020 – 9/2023 Wisconsin SeaGrant. Collaborator. Effects of 2,4-D on fathead minnow physiology. (Gavin Dehnert,
PI; $250,000)
2019 - 2023 NSERC – CRD grant. Collaborator. Physiological constraints during wintering and migration in
snow buntings across a gradient of agriculture intensity. (François Vézina, PI; 299,981cad)
Past grants
2018 NSERC Engage grant. Collaborator, named scientist. (Oliver Love, PI; 25,000cad)
2017 PBEEE FRQNT short-term research fellowship, Université du Québec à Rimouski (12,000cad)
2016 Society for Integrative and Comparative Biology, grants-in-aid ($1,000)
 Emily Cornelius Ruhs Curriculum vitae – April 2023 4

2015 Global Health Institute graduate student research award ($5,000)

Physiological and Biochemical Zoology outstanding abstract award- ICCPB
conference ($800)
2014 Wisconsin Ornithological Society grant ($500)
2012 National Geographic Young Explorer grant ($5,000)
Sigma Xi grant-in-aid of research recipient ($1,000)
Explorer’s club, Exploration fund, grant recipient ($2,500)
Georgia Ornithological Society (GOS) Howe grant recipient ($2000)
2011 Odum School of Ecology, UGA small grants award recipient ($600)
Wormsloe Foundation Fellowship, University of Georgia (2 years)

HONORS AND AWARDS

Honors and Awards
2016 Merill and Emita Hastings foundation award for outstanding female graduate student
2014 Ruffed Grouse Society Terry Amundson award for outstanding graduate student
2012 National Geographic Young Explorer
Travel
2024 Biological Sciences Division, Career Advancement for Postdocs ($1000)
2022 Biological Sciences Division, Career Advancement for Postdocs ($500)
2019 Québec Centre for Biodiversity Science Excellence award (1100cad)
2018 Québec Centre for Biodiversity Science Excellence award (1500cad)
American Physiological Society travel award ($750)
Society for Canadian Ornithologists travel grant (200cad)
Company of Biologists - Society for Experimental Biology travel grant ($400)
2014 Journal of Experimental Biology travel fellowship (£2,300)

INVITED SEMINARS AND EXCHANGES

2024 Impacts of Energetic Constraints on Animal Immunity and Disease, Madagascar MBC
2023 Impacts of Energetic Constraints on Animal Immunity and Disease, University of Georgia, CEID
Impacts of Energetic Constraints on Animal Health, East Carolina University, Biology
Impacts of Energetic Constraints on Animal Health, Duke University, Biology
2022 Seasonality of Paramyxoviruses in African Bats, University of Chicago, EcoShake
Impacts of Energetic Constraints on Animal Health, Loyola University, Biology
2018 Conservation physiology in action: examples from eco-physiological studies. Université du Quebéc
à Rimouski, conservation physiology course
2018 Research exchange - oxidative stress and muscle fiber analysis. Comparative Animal Physiology
laboratory, Dr. Ana Jimenez, Colgate University
2017 The effects of resource availability and unpredictable climate on avian energetics and immune
function. Université du Quebéc à Rimouski, fall departmental seminar series

COURSE LECTURES
2024 University of Chicago, Ecological and Epidemiological Modeling in Madagascar
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Generalized linear models (lecture and tutorial), Epidemic modeling hands-on

2022 University of Chicago, Coding for Conservation (hybrid online/Madagascar)
Introduction to generalized linear mixed models (lecture and tutorial)
2020 University of South Florida, Foundations of Public Health Immunology
Lecture design: Immune manipulation: therapeutics and vaccination design
2020 California State University-Fresno, Ecoimmunology course
Lecture: Constraints on and trade-offs with immunity
2020 SUNY-ESF, Animal Physiology course
Lecture: A delicate balance: resource allocation, immunity, and disease in birds
2018 University of Wisconsin-Madison, Animal Physiology course
Lectures: peer review process, avian reproduction, physiology of eggs, mass, and energy budgets
2017 University of Wisconsin-Madison, Animal Physiology course
Lectures: peer review process, oxygen delivery and adaptations to altitude
2016 University of Wisconsin-Madison, Animal Physiology course
Lectures: peer review process, adaptations to extreme temperatures, avian reproduction, egg
physiology
2015 University of Wisconsin-Madison, Animal Physiology course
Lectures: heat exchange, avian reproduction
2013 University of Georgia, Freshman Odyssey Migration course
Lecture: migrating while sick

COURSE DESIGN (*indicates short-course/workshop)

2024 *Ecological and Epidemiological Modeling in Madagascar (linear models and beyond)
2023 *History of Eugenics: co-production of genetics and social control of reproduction
2022 *Coding for Conservation (linear models and beyond; year-long one-on-one mentoring)
*Colonialism in Ecology and Evolution (parachute science and fieldwork)
2018 Animal Physiological Ecology (scaffolded research and grant writing)

CONFERENCES AND SYMPOSIA ORGANIZED

2020 Organizing committee for Climate Change and Wildlife Health workshop. United States
Geological Survey (USGS). Madison, WI
2019 Session co-organizer for International Congress of Comparative Physiology and Biochemistry:
“Hitting a wall: the pace of flexible adjustments to acute environmental change.” Co-organized
with François Vézina. Session included 5 invited speakers.
Sponsored by the Society for Experimental Biologists and Sable Systems, international
2014 Session co-organizer for Annual Meeting of the Ecological Society of America: “Citizen
Science from sea to sky: Investigating ecological responses to global environmental change”. Co-
organized with Dara Satterfield. Session included 10 invited speakers.

CONFERENCE PRESENTATIONS (*invited speaker)

2024 Contributed talk. Midwest SETAC. LaCrosse, WI
Contributed poster. Ecology and Evolution of Infectious Diseases. Stanford
2023 Contributed poster. International Society of Endocytobiology. FMNH. Chicago, IL
Contributed poster. Ecology and Evolution of Infectious Diseases. Penn State
Contributed poster. Society for Environmental Toxicology and Chemistry. Dublin, Ireland
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2022 Contributed talk. Darwin’s retreat fall symposium. Chicago, IL

Contributed talk. International Symposium on Infectious Diseases of Bats. Ft Collins, CO
Contributed poster. Ecology and Evolution of Infectious Diseases. Atlanta, GA
2021 Contributed talk. Society for Integrative and Comparative Biology. Virtual
2020 Contributed talk*. Wild and Comparative Immunology workshop. Virtual
Contributed poster. Gordon Research Conference. Manchester, NH (Cancelled -COVid)
Contributed poster. Society for Integrative and Comparative Biology. Austin, TX
2019 Contributed talk*. ICCPB. Ottawa, Canada
Contributed poster. g2p2pop RCN workshop. Minneapolis, MN
Contributed talk. Society for Integrative and Comparative Biology. Tampa, FL
2018 Contributed poster. American Physiological Society. New Orleans, LO
Contributed talk. Society for Experimental Biology. Florence, Italy
Contributed talk. International Ornithological Congress. Vancouver, Canada
Contributed poster. International Ornithological Congress. Vancouver, Canada
2017 Contributed talk. Society for Integrative and Comparative Biology. New Orleans, LA
2016 Contributed talk. One-health Symposium. Madison, WI
Contributed talk. Society for Integrative and Comparative Biology. Portland, OR
Contributed poster. Society for Integrative and Comparative Biology. Portland, OR
2015 Contributed talk. ICCPB. Kraków, Poland
Contributed talk. Ecological Society of America. Baltimore, MD
Contributed poster. Ecology and Evolution of Infectious Diseases. Athens, GA
2014 Contributed poster. American Ornithologist’s Union meeting. Estes Park, CO
2013 Contributed talk. Ecological Society of America. Minneapolis, MN
Contributed poster. Wildlife Disease Association meeting. Knoxville, TN
Contributed talk. Wormsloe Research Symposium. University of Georgia. Athens, GA
Contributed poster. Georgia Ornithological Society spring meeting. Hiawassee, GA
Contributed talk. Graduate Student Symposium. University of Georgia. Athens, GA
2012: Contributed talk. Wormsloe Research Symposium. University of Georgia. Athens, GA
Contributed talk. Graduate Student Symposium. University of Georgia. Athens, GA
Co-authored presentations
2024 Anna Ricardi. Contributed poster. University of Chicago Undergraduate symposium
Eve Milusich. Contributed poster. SETAC. LaCrosse, Wisconsin
2022 Brian Anton. Contributed poster. SETAC. Madison, Wisconsin
Brian Anton. Contributed poster. SICB. Phoenix, Arizona
2019 François Vézina. Contributed talk. ICCPB, Ottawa, Canada
Ana Jimenez. Contributed poster. ICCPB, Ottawa, Canada
2018 Mark Jankowski. Society of Environmental Toxicology and Chemistry, Sacramento
François Vézina. Contributed talk. International Ornithological Congress, Vancouver
Co-authored presentations by undergraduates
2019. Kailey Tobin. Contributed poster. Society for Integrative and Comparative Biology
Erin O’Connor. Contributed poster. Society for Integrative and Comparative Biology
2018 Kailey Tobin. Colgate University. NY6 Undergraduate research conference
Erin O’Connor. Colgate University. NY6 Undergraduate research conference

RESEARCH EXPERIENCE
Employment
8/2013-12/2017 Research assistant - Forest and Wildlife Ecology, University of Wisconsin-Madison
 Emily Cornelius Ruhs Curriculum vitae – April 2023 7

Fall 2015/16/17 Teaching assistant & Lecturer - Physiological Animal Ecology (FWE 401), Forest and
Wildlife Ecology, University of Wisconsin-Madison
1/2013-5/2013 Laboratory assistant, Ecology (ECOL 3500), Odum School of Ecology, University of
Georgia
8/2011-12/2012 Research assistant, Odum School of Ecology, University of Georgia
9/2009-6/2011 Laboratory technician, Avian Health and Disease Ecology laboratory, Michigan State
University
Professional development
2023 Genomic approaches for wildlife conservation and management. TWS – Louisville.
Processing RNA-Seq data workshop. University of Chicago.
2021 Clinic on Dynamical Approaches to Infectious Disease Data Workshop (virtual)
American Ornithological Society (AOS-SCO) annual meeting (virtual)
Evolutionary Quantitative Genetics workshop, Friday Harbor (virtual)
International Society for Evolutionary Medicine and Public Health conference (virtual)
2020 Impacts of Climate Change on wildlife health workshop, USGS.
RNA-seq data analysis computational workshop, University of South Florida.
RNA-seq Illumina sequencing laboratory workshop, University of South Florida.
2019 g2p2pop RCN workshop: modeling from genomes to phenomes to populations.
2015 Core techniques in protein and genetic engineering training, BTCI-Promega.
2013 Wildlife Disease Modeling Workshop, Wildlife Disease Association/NimBios.

TEACHING AND MENTORING EXPERIENCE (*student continued to vet/med or graduate school)

Student mentoring
15. Anna Riccardi Ind. Research U. Chicago 2023-2024 Ecoimmunology
14. Mars Woodward Postbac - NIH U. Chicago 2023 Bat hematology
13. Areen Kahn High school Lab School – Chi 2023 Museum sciences
12. Vera Soloview Lab tech U. Chicago 2022-2023 Avian physiology
11. Samantha Oakey* Lab tech U. South Florida Spring 2020 Allometry
10. Maya Black Ind Research U. of Wisconsin Spring 2018 Ptilochronology
9. Daniel Erikson Lab assistant U. of Wisconsin Spring 2017 Laboratory techniques
8. Morgan Walker* Field tech U. of Wisconsin 2016 Avian field biology
7. Jolanie Roy* Ind. Research U. of Québec Sum. 2016 Reproductive trade-offs
6. Sarah Senecal* Ind. Research U. of Québec Sum. 2016 Reproductive trade-offs
5. Héloïse Albagnac Ind. Research U. of Québec Sum. 2016 Reproductive trade-offs
4. Cecile Vansteenberghe Ind. Research U. of Québec Sum. 2016 Reproductive trade-offs
3. Destiny Chenault BIO 152 U. of Wisconsin Fall 2014 Ecoimmunology
2. Diane Borden* Field tech U. of Georgia 2012-2013 Avian field biology
1. Heather Abernathy Field tech U. of Georgia 2011-2012 Avian field biology
Professional development
2023 Diversity, Equity, and Inclusion. 8-series certificate. University of Chicago.
2022 UChicago Diversity & Inclusion office: Inclusive language and community building.
Postdoc Mentor Training 8-series workshop/certificate. University of Chicago.
2021 Structuring the classroom for inclusive teaching. CIRTL.
A mindset shift: how DEI improves individual and overall performance. AOS (virtual).
2017 The college classroom: Teaching inclusively. CIRTL.
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2017 Relentless curiosity- fall kickoff event. University of Wisconsin-Madison Teaching Academy
2017 Designing writing activities to solve teaching and learning challenges. University of Wisconsin-
Madison writing center and DELTA program.
2016 Writing effective multiple-choice exam questions. CIRTL.

PROFESSIONAL AND PUBLIC SERVICE

Editorial board activities
Associate Editor Animal Migration Journal, 2019-2022
Assistant Editor Animal Migration Journal, 2014-2019
Invited ad-hoc reviewer: Animal Migration Journal, Wilson Journal of Ornithology, Oecologia,
Physiological and Biochemical Zoology, Journal of Animal Ecology, Journal of Biogeography, Canadian Journal of
Zoology, Proceedings of the Royal Society B, Journal of Avian Biology, Nature Scientific reports
NSF reviewer. Physiological Mechanisms and Biomechanics Program. 2023
Special issues organized
Animal Migration, 2021: Arctic migrations in a changing world, co-editor with Andy Davis
Animal Migration, 2019: Stress physiology of bird migration, co-editor with Andy Davis
Journal of Comparative Physiology B – symposium papers from 2019 ICCPB
Professional Service
2019-2021 SICB, DCPB section- best student presentation award coordinator
2014-2016 Student Liaison for the Disease Ecology section of Ecological Society of America
2013-2016 Graduate Women in Science (Beta chapter) Outreach committee
University Service
2021-present UChicago - Diversity, Equity, and Inclusion committee
Curriculum development sub-committee: Decolonizing Ecology – journal club
Mental health sub-committee
2017-2019 DELTA graduate student representative and steering committee member
2013-2016 UW-Madison - Forest, and Wildlife Ecology departmental enhancement committee
2012-2013 University of Georgia - Odum School of Ecology graduate Student Symposium fundraising
committee
Broader community service
2021 Skype a Scientist, multiple elementary age classrooms
Briggs career chats (virtual), Michigan State University
2018 Madison Audubon Society – summer elementary programs
Girls, Inc. Goodman Community Center, career day
2016 Operation Fresh Start (Madison Audubon Society) summer program, lecturer
2014-2015 Madison Audubon Society wild time explorer’s summer program (grades 3-10)
Science Expeditions, Wisconsin Institutes for Discovery
2013 WiSciFest, Wisconsin Institutes for Discovery
2013 Boy Scouts of America, Environmental Science Merit badge, Oil spill remediation
2012-2013 Collaboratively developed ‘ecology learning modules’ to school age students
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