Writing Papers 20
Writing Papers 20
Writing Papers 20
Author: J R Crowther
This module will help in all aspects of writing up papers and reports. The language now
most commonly used is English. Sorry about this but it is the current way to do things.
Published in
Bulletin for authors, Veterinarni Medicina, 2007, 52, No. 3 with kind permission of the author
1. Why?
You can learn by reading widely and thinking critically about the quality of what you are reading.
You need constant practice to develop the clarity of style that is essential to good scientific writing.
1. Planning structure.
2. Your reader.
3. Choosing your words.
c. New discoveries and processes must be conveyed to other interested parties in a manner that
differs from most other writing forms.
d. The purpose of science writing is to inform, BUT it should allow the reader to repeat an
experiment and verify published results and/or use published results as a guide to related
research.
3. The vision in planning research should enable seeing a paper's structure and even conclusions
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determined by the actual results obtained and their analysis.
Essentially a paper should be almost written at the planning stage since here we lay out the key
components involving:
Hypothesis.
Methods.
Decision points.
Figure 1 shows a rather simple example to show that most of the planning covers a paper. The
main problem is gathering and analysing data. So we already have a major template form the
paper though the experimental design.
f the planning is poor then of course the paper is not written. Poor planning and changing plans in
the middle of experiments leads to confusion. Decision points dependant on data have to be
foreseen.
Here a bag containing 100 balls is given. The balls are either black or white, they may be all black
or all white or a combination. A hypothesis (trivial) is made that they are all white.
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Figure 1. Planning the experiment should outline the plan for the paper
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2 Structure of scientific journal papers
Structure of papers
1. Title
2. Abstract
3. Introduction
4. Materials and methods
5. Results
6. Discussion
7. Literature cited
8. Acknowledgements
Structure of papers
1. Title
2. Abstract (also called summary)
3. Introduction
4. Materials and Methods
5. Experimental Results (Results)
6. Discussion, (Discussion and Conclusions)
7. Literature Cited 8. Acknowledgments
Figure 1 shows the mess we can get into where methods, results and discussion are
mixed.
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Figure 1. The good paper on left, has clear divisions for methods, results and discussion.
The bad paper on right, mixes a these at all levels and is usually too long, confusing and
therefore unsuitable for publication.
This type of mixing is most common in scientists when they begin to write up material.
So the use of formal devices like subheadings, tables, figures and diagrams is nearly always
appropriate.
Sensible use of subheadings helps define the structure of your work, and makes it easier to
avoid linking sentences.
Tables, figures and diagrams, collectively referred to here as illustrations, should always be
used where they will save words or make your argument clearer. However, you must make
sure that your reader does not need to refer to them in order to follow the general flow of your
arguments.
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1. Title
1. Title is important.
'Studies on'
'Characterisation of'
'Observations on'
'Investigations into'
4. Avoid jargon.
2. Abstract
2. The Abstract is the first part of the paper to be read BUT should be is the last part to be
produced.
3. The Abstract assists others to decide whether to consult the full text of the paper.
5. The Abstract must be brief and yet it should describe the scope of the paper, summarize its
results and state its conclusions.
7. Past tense
8. No references.
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10. State principle objectives.
3. Introduction
1. The Introduction should include a general statement of the scope of the problem
6. Be sure to give credit to all sources from which you have taken ideas
Step-by-step procedures are generally not needed unless they are original
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6. Care with syntax
9. Nomenclature correct.
Source, how made, genotype, phenotype? Use table where large number
5. Results
3. Place in a LOGICAL ORDER (this need not be the order you did experiments).
c. Each must be intelligible to the reader without reference to the text (if necessary give it
a legend as well as a title).
d. Each must be referred to, in the text, by its number and in the order they appear in
text.
e. The sense of the text must be intelligible without reference to the illustrations.
Legends
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2. Says what figure shows.
4. Information as to conditions.
Thirty-three percent of the mice used in the experiment were cured by the test drug; 33%
of the test population were unaffected...and the third mouse got away.
All experimentally measured quantities should be quoted with errors and with the
correct number of significant figures. Always use the standard deviation as the
standard, statistical, measurement error.
6. Discussion
1. The purpose of the Discussion is to show the relationships indicated by your results.
3. Indicate how your results agree or contrast with previously published or accepted data.
4. State your conclusions as clearly as possible and summarize evidence for each conclusion.
5. Keep in mind that the very nature of scientific research will limit the number of conclusions
that you should expect from any experimental process.
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7. Literature Cited
8. Acknowledgements
Word Comment
Quite AVOID
It has been shown that AVOID
Only Care
While Do not use this for whereas
Prior to Use- before
In the event that Jargon AVOID
At this point in time Jargon AVOID
Experiment was ‘carried AVOID
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In the event that AVOID
7. Never start any sentence with 'it' in fact avoid 'it' anywhere in text
'That' is restrictive
11. Numbers
Two or more digits are numerals e.g. three experiments and 12 experiments
In a series of numbers in a sentence where one is greater than one digit then use all as
numerals e.g. I gave A to 3 rats, B to 6 rats and C to 9 rats
12. Punctuation
13. Jargon
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Be concise
Clear thinking and careful planning lead to economy of expression and avoidance of
repetition and padding.
Beware of fashion
Words and phrases can become fashionable and over-used, and their meaning often
becomes uncertain.
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Spell correctly
Bad spelling may distract and irritate your reader. Use your dictionary.
It is a difficult pronoun for most inexperienced writers of science to use confidently and
without causing annoyance (particularly to members of an older generation who were brought
up with the mistaken belief that impersonality confers impartiality). However, never go to such
lengths to avoid 'I' that your prose becomes ugly and clumsy. Try, for example, ways of
eliminating the 'I' from this memorable sentence:
Data, media, strata, criteria, bacteria and phenomena are plurals of datum, medium,
stratum, criterion, bacterium, and phenomenon, respectively.
Data, media, strata, criteria, bacteria and phenomena should be used with plural verbs.
Farther/further
When physical distance is to be referred, always use farther– the word that has far in it.
Right: The father you travel on your holidays, the further your bank account will drop.
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Fewer/less
Right: It took Harinder less than five minutes to spend a little less than one hundred euros.
Imply/infer
Wrong: Tom meant to infer that George was misinformed, not lying.
Right: Tom meant to imply that George was misinformed, not lying.
Wrong: From the size of his house, she implied that he was rich.
Right: From the size of his house, she inferred that he was rich.
That / which
That is properly used to introduce a restrictive, or defining, clause (which identifies what is
being talked about) and is not preceded by a comma.
Which is used to introduce a nonrestrictive or non defining, clause (which gives additional
information about the subject that has already been identified) and is always preceded by a
comma.
Wrong: The pen I gave Tom, that he liked, was made in India.
Right: The pen I gave Tom, which he liked, was made in India.
In some cases it is allowed to use which to introduce a restrictive clause to avoid repetition of
the word that:
Right: I gave Tom that pen which I bought from India. (note: no comma before which)
Affect/effect
Affect means to have an influence on or cause a change in. Effect means to produce a
result or bring about.
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Right: Excessive drinking can adversely affect health.
(Effect is also used as a noun. Excessive drinking can have an adverse effect on health)
A/an
Use a before words beginning with a consonant or consonant sound, and use anbefore
words beginning with a vowel or vowel sound (the vowel u often has a consonant sound at
the beginning of words such as university and union, and therefore must be preceded by a
even thought they start with a vowel).
Comprise/compose
The whole comprises the parts, and the parts compose the whole.
Or
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Comma
Effective use of the comma is determined as much as by commonsense and by good taste
as by grammatical regulations. It serves several purposes: to separate, to introduce, to
enclose.
Right: Since arriving at Sheffield Park, the engine, preserved in Southern Railway olive green
livery, has been a stalwart on the line, giving many miles.
‘Try not to scratch and see your doctor if any reactions persist’ should be ‘Try not to scratch,
and see your doctor if any reactions persist’ (see your doctor should be closely related to
what follows it, not to what precedes it).
‘We stood by a wall sipping coffee provided by the host’ should be ‘We stood by a wall,
sipping coffee provided bythe host’.
Use a comma to separate a series of words or group of words. Place a comma before the and
preceding the last item.
Right: We arrived at the airport, waited in line, checked our baggage, and walked down the
concourse to our plan.
Right: I placed the order for magazines, newspapers, journals, and newsletters.
Right: Yes, the Research Evaluation Department will attend the meeting.
Use a comma to separate two or more adjectives that describe a noun (note: the comma is
taking the place of the word and)
Right: The applicant was professional, knowledgeable, and experienced in the area of
accounting.
Use commas to enclose the name of anyone you are writing directly to when the name is
used in the body of your document.
Right: I am counting on you to get the order processed this week, Ms. Schellander.
Right: The additional supply order, however, will not be processed until early tomorrow.
Right: Mr. Timothy Smith, our new manager, will be introduced at our next meeting.
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Right: There are two job openings for a person with molecular biology experience, and I know
you will get one.
Right: We would like to have our Staff Council members to attend the conference, but we
cannot afford the high cost.
Semicolon
Use a semicolon to separate two or more independent clauses related in meaning and not
joined with a conjunction.
Right: Operations tripled productivity in the first six months; finance doubled productivity.
Right: The new employee was perfectly suited for his new job in the research department; he
learned the procedures and systems in less than a month.
Use a semicolon to separate equal parts of a sentence when commas would be confusing.
Right: The officers of the Staff Council are John Romero, President; Susan Greenberg, Vice-
President; Timothy Smith, Treasurer; and James Jackson, Secretary.
Right: He worked overtime to solve the computer difficulties; in fact, he rarely got home before
10 p.m. each night.
Right: Tom was terrific in dealing with difficult customers by phone; consequently, we
forwarded all the tough calls to him.
Colon
The colon marks a slightly stronger break than does the semicolon and a slightly weaker
breakthan does the full stop. The most common use of the colon is for connecting general
statements with specific instances. It signals to the reader that there is more to come.
Dash
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Parentheses (singular: parenthesis)
They are used to enclose nonessential material. They signal ‘by the way’ to the reader. Do
not over use them.
If the material enclosed falls at the end of a sentence, the end mark is placed outside the
closing parenthesis.
If the material is a complete sentence within itself, the end mark is placed inside the closing
parenthesis.
Quotation marks
They are marks of enclosure for words, phrases, clauses, sentences, or paragraphs.
Question marks and exclamation points go inside the closing quotations mark when they are
part of what is being quoted.
Compare to/with
When this expression is used, care must be taken to preserve exact parallelism between the
items compared.
Wrong: Compared with old technology, the great advantage of a Musto is the way it copes
with changing conditions (this sentence compares the advantage of a Musto with old
technology)
Right: Compared with the jackets made by the old technology, a Musto has the great
advantage that it can cope with changing conditions.
Wrong: Compared to the Eighties, more of us visit the dentist at least once a year (it is
incorrect to compare the Eighties with ‘more of us’. It is correct to say ‘Compared to
Eighties, Nineties are…..’
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Each
Right: Although each of the scenes is relatively short, they move smoothly from one tothe
next.
Similarly use a singular verb after: each one, every, everyone, everybody, either, neither,
nobody, no one, anyone, anybody, another, one, somebody, someone, and much.
And
A compound subject (more than one subject) joined by and requires a plural verb.
Or/nor
Right: The chairman or the president is willing to discuss the financial goals for the year.
In either/or and neither/nor constructions, the verb agrees with the nearest subject.
Right: Either the employer or the employees are going to pay the tax.
Right: Neither the buyers nor the sales manager is in favour of the system.
Right: Neither Mr. Pintoo nor his employees have reached their goal.
Collecting nouns
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The Board of Directors meets on Wednesday.
Apart from
Apostrophe
Where a plural noun ends in s, as most of them do, it is proper to add the apostrophe without
a further s.
Array
As
Where as is used to introduce appositional phrases the connection between the phrase and
the subject it amplifies must be preserved.
Wrong: As a self-employed businessman, Tom’s car is his second home (The car must not be
said to be a businessman)
Right: As a self-employed businessman, Tom finds his car is his second home.
Like
Never use like before phrases and clauses, where as, as though, as if or thatis proper.
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Wrong: He looks like he is happy.
Its
Its is a possessive pronoun and does not need an apostrophe to make it indicate
possession.
Most/more
Right: That is the stupidest (or most stupid) thing I have heard.
None/nobody/none
Two negatives (such as nobody, no, none, not, cannot, could not, would not, should not,
never, nothing, hardly)should never be used in the same statement.
Right: The plays he called hardly ever (or never) seemed to work.
These/those
Pronouns must agree in number with the words to which they refer. These and those are
plural of this and that.
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Can/may
Good/well
Good should be used with descriptive verbs such as look, feel, sound, and taste.
Note: Use well to refer to one’s state of health, and use good to refer to one’s appearance.
Advice/advise
Among/between
Principal/principle
Capitalize them, as
in the North
back East
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Do not capitalize these words when they merely indicate directions or general location.
Seasons
fall meeting
spring conference
Titles of headings
Capitalize all words with four or more letters. Also capitalize words with fewer than four letters
except:
Articles: the, a, an
Short prepositions: at, by, for, in, of, off, on, out, to, up.
Note: Even the articles, short conjunctions, and short prepositions should be capitalized when
they are the first and last words of a title.
Numbers
Expressed in words:
Numbers from one to ten: five, seven, ten (exception: a series of numbers, any of which is
over ten. An example: We need to purchase 5 rolls of tape, 8 pencil, 12 file covers, and
5pen.)
Ordinal numbers expressed in one or two words: in the twenty-first century, the division’s
fortieth anniversary.
Exact or approximate numbers that can be expressed in one or two words: twenty-five visits,
more than two million dollars.
Smaller of two numbers when used together and one is part of a compound modifier: Three
30-pound cartons, 20 four-cent stamps.
Who/that
Always use who to refer to persons, and use that to refer to animals and things.
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Wrong: This is the cow who gives 40 litres milk per day.
Right: This is the cow that gives 40 litres milk per day.
All right/alright
Along with
Care must be taken with the verb after along with. Use singular form of the verb.
Along with does not work like and. Tom and Harinder were present at the meeting, but
Tom, along with Harinder, was present at the meeting.
Although
When although introduces a descriptive phrase, care must be taken to preserve accuracy in
matching.
Wrong: Although a very young man, his health was bad (his health was not a young man).
Anyone
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Writing up in the context of how your planned
research is progressing
1. Experimental progress
The following figures illustrate some features of research which can be split up into experiments or
investigations.
There may be a good deal of dependency on results or developments in one experiment by the next.
Sometimes a careful reassessment of progress can lead to a change in perspective with reference to
writing up.
Figure 1 shows an idealised set of experiments planned and made allowing a paper to be written up.
Experiment 1 yields data to allow Experiment 2, etc., to a final Experiment 4 which gives data to allow
some hypothesis to be
proven.
Figure 2 shows a much more common situation where problems are seen in either obtaining data or
in fact where data indicated a change in plan.
Here, Experiment 2 cannot be done without development of other methods. This takes time and is not
necessarily successful.
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A change in direction may be needed where developments do not work.
Figure 3 shows a more complicated situation where developments are needed before experiments 2
and 3.
One might start doubting the original plan at this stage where such needs were not envisaged.
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Figure 3. Even more complicated developmental needs
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5. It gets worse
Figure 4 shows an even more complicated story where considerable development is needed at all
three experimental planning levels.
Assessment as to the effect of this progression has to be made according to the importance of the
data being sort (the problem) as well as the support through continued funding and laboratory
access.
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Figure 4. Even more complicated relationships as to progress of work
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6. Complications
Of course it can be much more complicated where one is experimenting more into an area of science
where there is little known or development is slight.
Here we may have to continuously revise and repeat experiments until more definitive data points the
way to a conclusive result. Again this might be considered as all preliminary data and the degree to
which such data is shown depends on its fundamental importance.
If you have achieved methodologies which are novel then the method per se can be summed up.
7. Time
What might not be reflected is the time taken to achieve this status.
It is important to get this over, particularly where finding bodies are anxious to see a return on
investment.
The frustrations of research centre on not achieving success in time. If there is sufficient data to show
'promise' then this might be enough to produce a paper.
So write up in a logical sequence based on the importance of the findings irrespective of the
sequence that you performed the experiments.
8. Further complications
There may be another publication involving your area of work which either beats you to a major
finding, alters your perspective or provides data directly opposite to that you found.
Whether you consider that independent findings, reaching the same conclusions, value
adds to knowledge.
Of course when you submit the editors may have differing opinions about work which is similar to
others.
Despite good planning (we have to regard planning as a more dynamic process with some guesswork
included) the experimental approach is always more complicated than envisaged.
Review Figures 1 to 4 that illustrate the effects of having to revise and develop during research on
time and effort and link this to writing up.
The effects are also examined with in the Planning Modules B01 and B02 from the pouint
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of view of good research design
The figures took a fairly simple situation where the 4 experiments were considered.
Often there are more steps involved, each with risks and the need to adjust parameters based on
data. The secret of good research is to identify as soon as possible, areas which cause problems and
react in the most efficient way to solve or reassess needs.
This includes:
This might be imposed when deadlines set by funding agencies are not met.
9. Overview
To get a flavour of the complications which might be present in a project run by you only and then in a
joint exercise, we can look at Figures 5 which illustrates the pressures of time when extensive
research development is needed.
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Figure 5. reminder of the flow of work where there is need to develop before each experimental
stages 1, 2 and 3.
Figure 6 below shows the effects on development on achieving specified goals in your plans.
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Figure 6. Time course for actual experiments involved in examining a problem (intended publication
after 12 months) and planned time.
Lost time for development is shown in green boxes. The white boxes show the achievement of
success in Experiments 1 to 4. The red vertical lines indicate the expected times (as judged in the
yellow time bar) for the completion of the Experiments 1 to 4 as originally planned.
Note also that once we have achieved Experiment 3, then the time is unaffected to achieve the
required results. So publication of a methods paper if you stop at Experiment 3, will allow others to do
rapid work and achieve good results in 2 months!
Note the time needed to get from experiment 2 to 3 is long. Here there may be problems in continuing
research on this line (self imposed and outside pressure).
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Resources for authors
http://authors.elsevier.com/
http://dictionary.reference.com/
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