Chapter 6

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BURTON'S

MICROBIOLOGY
FOR THE HEALTH SCIENCES

Chapter 6:

The
Biochemical
Basis of Life
ORGANIC CHEMISTRY
–Carbon Bonds
–Cyclic Compounds.

BIOCHEMISTRY
–Carbohydrates
–Lipids
–Proteins
–Nucleic Acids
Introduction
•A microorganism can be thought of as a “bag” of chemicals that
interact with each other in a variety of ways; even the bag itself
is composed of chemicals.
•Everything a microorganism is and does is related to chemistry.
•Organic chemistry is the study of compounds that contain
carbon.
•Inorganic chemistry involves all other chemical
•Biochemistry is the chemistry of living cells
Organic
Chemistry
•Organic compounds contain carbon.
•Organic compounds are not necessarily
related to living organisms
•Organic chemistry involves fossil fuels,
dyes, drugs, paper, ink, paints, plastics,
gasoline, rubber tires, food, and
clothing.
Organic
Chemistry
•Carbon atoms can bond to four other
atoms.
•There are three ways in which carbon
atoms can bond to each other: single
bond, double bond, and triple bond.
•A covalent bond is one in which a pair
of electrons is shared.
•When atoms of other elements attach to
available carbon bonds, compounds are
formed.
•A series of carbon atoms bonded
together is referred to as a chain.
•When carbon atoms link to other carbon
atoms to close a chain, they form rings
or cyclic compounds.
Organic
Chemistry

•If only hydrogen atoms are bonded to


the available carbon bonds,
hydrocarbons are formed.

•Therefore, a hydrocarbon is an organic


molecule that contains only carbon and
hydrogen atoms; some examples of
simple hydrocarbons are shown here:
Biochemistry
•Biochemistry is the study of biology at
the molecularlevel; it is the chemistry of
living organisms.
•Biochemistry involves the study of
biomolecules present within living
organisms biomolecules in living
organisms are usually large molecules
called macromolecules.
•Macromolecules include carbohydrates,
lipids, proteins, and nucleic acids.
–Other examples: vitamins, enzymes,
hormones, and energy-carrying
molecules such as adenosine
triphosphate (ATP).
Biochemistry
Carbohydrates

•Carbohydrates are biomolecules


composed of carbon, hydrogen, and
oxygen (in the ratio 1:2:1).
•Examples include glucose, fructose,
sucrose, lactose, maltose, starch,
cellulose, and
glycogen.
•Categories of carbohydrates include
monosaccharides, disaccharides, and
polysaccharides.
Biochemistry
Monosaccharides
•Monosaccharides are the smallest and
simplest of the carbohydrates. Mono
means one, referring to the number of
rings in the structure.
–Glucose (C6H12O6) is the most
important monosaccharide in nature
–The main source of energy for body
cells is glucose.
Biochemistry
Disaccharides

•“Di” means two; disaccharides are


double-ringed sugars that result from
the combination of two
monosaccharides
•Sucrose (table sugar), lactose, and
maltose are examples of disaccharides.
•Disaccharides react with water in a
process called a hydrolysis reaction,
which causes them to break down into
two monosaccharides.
Biochemistry
Polysaccharides

•Polysaccharides
are defined as carbohydrates that
are composed of many
monosaccharides. Most contain
hundreds (e.g., starch and glycogen).
•Polysaccharides serve two main
functions:
–Store of energy (e.g., glycogen in
animal cells and starch in plant cells)
–Provide a “tough” molecule for
structural support and protection (e.g.,
bacterial capsules)
Lipids

•An important class of biomolecules.


•Lipids are essential constituents of
most living cells.
•Lipids can be classified into the
following categories:
-Waxes -Glycolipids
-Fats and oils -Steroids
-Phospholipids -Prostaglandins and
leukotrienes
Lipids •Fatty acids are the building blocks of
Fatty Acids lipids; they are long-chain carboxylic
acids that are insoluble in water.
•Saturated fatty acids contain one
single bond between carbon atoms;
they are solid at room temperature.
•Monounsaturated fatty acids have
one double bond in the carbon chain
and are found in butter, olives, and
peanuts.
•Polyunsaturated fatty acids contain
two or more double bonds
and are found in soybeans, safflowers,
and corn.
•Essential fatty acids cannot be
synthesized in the human body and
must be provided in the diet.
Lipids
Waxes, Fats •A wax consists of a saturated fatty
and Oil acid and a long-chain alcohol.
–Examples:
the wax coating on fruits, leaves, skin,
fur, and feathers of animals.
•Fats and oils are the most common
types of lipids.
They are also known as triglycerides
because they are composed of
glycerol and three fatty acids.
•Most fats come from animal sources
(e.g., beef); most
oils come from plant sources (e.g.,
olive oil).
Lipids
Phospholipids •Phospholipids
contain glycerol, fatty acids, a
phosphate group, and an alcohol. There
are two types:
–Glycerophospholipids (also known as
phosphoglycerides)
–Sphingolipids
•Glycerophospholipids are
the most abundant lipids in cell
membranes.
Proteins
•Proteins are the most essential
chemicals in all living cells
•Some proteins are the structural
components of membranes, cells, and
tissues; others are enzymes and
hormones.
•All proteins are polymers of amino
acids.
•All proteins contain carbon, hydrogen,
oxygen, and nitrogen (and sometimes
sulfur).
Proteins
Amino Acids
•Amino acids contain carbon, hydrogen,
oxygen, and nitrogen; some also have
sulfur in the molecule.
•Humans can synthesize certain amino
acids, but not others.
•The thousands of different proteins in
the human body are composed of a
wide variety of amino acids in various
quantities and arrangements.
Proteins
Enzyme

•Enzymes are specialized protein


molecules produced by living cells. They
are known as biological catalysts;
that is, they catalyze (speed up)
metabolic reactions.
•Almost every chemical reaction in a
cell requires a specific enzyme.
•DNA and RNA form the fourth major group of Nucleic Acids Function
biomolecules in living cells.
•DNA and RNA are critical to proper functioning of
a cell.
•DNA is the “hereditary molecule”¾the molecule that
contains the genes and genetic code.
•RNA molecules participate in the conversion of the
genetic code into proteins and other gene products.
•The five nitrogenous bases in nucleic
acids are adenine (A), guanine (G), thymine (T),
cytosine (C), and uracil (U). A and G are purines; T,
C, and U are
pyrimidines.
–Thymine is found in DNA but not in RNA. Uracil is
found in RNA, but not in DNA. The
other three bases are found in both.

DNA
Structure
•For a double-stranded DNA molecule
to form, the nitrogenous bases on the
two separate strands must bond
together.
–A always bonds with T via two
hydrogen bonds.
–G always bonds with C via three
hydrogen bonds.
–A–T and G–C are known as “base
pairs.”
•The bonding forces of the double-
stranded polymer cause it to assume
the shape of a double a-helix, similar to
a right-handedspiral staircase.
DNA
Replication
•When a cell is preparing to divide, all
DNA molecules in the chromosomes of
the cell must duplicate, thereby
ensuring that the same genetic
information is passed on to both
daughter cells. This is called DNA
replication.
DNA
•A gene is a particular segment of a DNA Gene Expression
molecule or chromosome.
•It is the sequence of the four nitrogenous
bases of DNA (i.e., A, G, C, and T) that spell
out the instructions for a particular gene
product.
•The Central Dogma explains the flow of
genetic information within a cell (proposed by
Francis Crick in 1957).
–DNA mRNA protein.
–Onegene of a DNA molecule is used to make
one molecule of mRNA by a process known as
transcription.
–The genetic information in the mRNA is then
used to make one or more protein by a process
known as translation.

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