Anita Bandrowski
San Diego, California, United States
2K followers
500+ connections
About
My projects: SciScore.com, SciCrunch.org, Neuroscience Information Framework…
Services
Articles by Anita
Activity
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Thank you, Cell Signaling Technology (CST), for having us this week! Our director of operations Riham Ayoubi had a blast at the CST laboratories…
Thank you, Cell Signaling Technology (CST), for having us this week! Our director of operations Riham Ayoubi had a blast at the CST laboratories…
Liked by Anita Bandrowski
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We are pleased to announce that the National Centre for the Replacement, Refinement and Reduction of Animals in Research (NC3Rs) have supported our…
We are pleased to announce that the National Centre for the Replacement, Refinement and Reduction of Animals in Research (NC3Rs) have supported our…
Liked by Anita Bandrowski
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Weekend reads: RFK Jr’s 2011 retraction; ‘the great AI witch hunt’; scientific misconduct in Switzerland featuring Ellie Kincaid IEEE Lisa Janicke…
Weekend reads: RFK Jr’s 2011 retraction; ‘the great AI witch hunt’; scientific misconduct in Switzerland featuring Ellie Kincaid IEEE Lisa Janicke…
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Volunteer Experience
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Research Resource Initiative Lead
https://rrids.org
- Present 11 years
Science and Technology
I build systems to help people define their reagents like antibodies, cell lines, plasmids, transgenic organisms, and other tools in the scientific literature in a slightly better way than they did before.
Publications
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RRIDs: A Simple Step toward Improving Reproducibility through Rigor and Transparency of Experimental Methods
Neuron
With the call for more rigorous scientific reporting, authentication, and transparency from the scientific community and funding agencies, one critical step is to make finding and identifying key resources in the published literature tractable. We discuss here the use of Research Resource Identifiers (RRIDs) especially as implemented in Cell Press and Elsevier journals as one tool to help resolve this tricky problem in reproducibility.
Other authorsSee publication -
Semantic query reformulation: the NIF experience
ACM
The NIF system is a semantic search engine that uses an ontology to improve search quality. In this experience paper we present SKEYQL, our semantic keyword query language and describe a number of ontology-based query reformulation strategies that go beyond standard query expansion techniques. We also present a set of lessons learnt and strategies that did not work. We reaffirm the importance of pre-annotating data to ensure quality query results.
Other authorsSee publication -
Pubmed publications
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Relevant publications in pubmed http://www.ncbi.nlm.nih.gov/pubmed/?term=bandrowski+A
or ORCID. http://orcid.org/0000-0002-5497-0243
Projects
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Monarch Initiative
The Monarch Initiative aims to provide easy-to-use tools and services to enable navigation of model systems data by semantically aggregating this data and making it queryable based on a number of facets, such as phenotypic similarity, network analysis, gene expression and function, and genomics.
Other creatorsSee project -
Neuroscience Gateway Portal
The Neuroscience Gateway (NSG) portal facilitates access and use of National Science Foundation (NSF) High Performance Computing (HPC) resources by neuroscientists. The portal offers to neuroscientists free supercomputer time acquired via the supercomputer time allocation process managed by the Extreme Science and Engineering Discovery Environment ( XSEDE) Resource Allocation Committee (XRAC). It also provides a community forum for neuroscientists to collaborate and share data.
Through a…The Neuroscience Gateway (NSG) portal facilitates access and use of National Science Foundation (NSF) High Performance Computing (HPC) resources by neuroscientists. The portal offers to neuroscientists free supercomputer time acquired via the supercomputer time allocation process managed by the Extreme Science and Engineering Discovery Environment ( XSEDE) Resource Allocation Committee (XRAC). It also provides a community forum for neuroscientists to collaborate and share data.
Through a simple web-based portal, the NSG provides an administratively and technologically streamlined environment for uploading models, specifying HPC job parameters, querying running job status, receiving job completion notices, and storing and retrieving output data. The NSG transparently distributes user's jobs to appropriate XSEDE HPC resources.Other creatorsSee project -
Neuroscience Information Framework
The Neuroscience Information Framework (NIF) helps researchers, clinicians and students find and utilize neuroscience related resources - enabling discovery and access to a diverse collection of research data and literature, contained in databases and structured web resources (i.e. the hidden web). NIF provides access to more than 6000 resources and 200 databases, making NIF the largest source of neuroscience resources and information on the web.
Other creatorsSee project -
PANTHER
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Scientific curator
Languages
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Polish
Elementary proficiency
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sql
Limited working proficiency
Recommendations received
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Join now to viewMore activity by Anita
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I am really excited to take part in this webinar! Hope you all tune in.
I am really excited to take part in this webinar! Hope you all tune in.
Shared by Anita Bandrowski
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Very excited to be part of this webinar series! Thanks Tony Alves and colleagues.
Very excited to be part of this webinar series! Thanks Tony Alves and colleagues.
Shared by Anita Bandrowski
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#RRID's for "off the shelf" instruments is a good step toward tracking these in the literature. Thanks for the mention Ted Habermann
#RRID's for "off the shelf" instruments is a good step toward tracking these in the literature. Thanks for the mention Ted Habermann
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Open sharing to drive innovation at its best!
Open sharing to drive innovation at its best!
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I will be speaking today on Open Science and sustainability at the ELRIG UK Drug Discovery 2024 #elrigdd24 conference, drawing on the exciting work…
I will be speaking today on Open Science and sustainability at the ELRIG UK Drug Discovery 2024 #elrigdd24 conference, drawing on the exciting work…
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Good morning from beautiful Chicago. It is our last day at #SfN24. Our director of operations Dr Riham Ayoubi will be at: -DSHB booth #1734, before…
Good morning from beautiful Chicago. It is our last day at #SfN24. Our director of operations Dr Riham Ayoubi will be at: -DSHB booth #1734, before…
Liked by Anita Bandrowski
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Since we are new to LinkedIn, we’d like to take a moment to (re)introduce ourselves. ✅ What The SCOSS - The Global Sustainability Coalition for…
Since we are new to LinkedIn, we’d like to take a moment to (re)introduce ourselves. ✅ What The SCOSS - The Global Sustainability Coalition for…
Liked by Anita Bandrowski
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