Apr 10, 2024 · Briefly, the FM-index consists of a sample of the suffix array (denoted as SA) and the Burrows–Wheeler transform (BWT) array. Given an input ...

Apr 10, 2024 · FM-indexes are crucial data structures in DNA alignment, but searching with them usually takes at least one random access per character in the ...

Oct 30, 2023 · Word-based FM-indexes support faster counting queries than standard FM-indexes when patterns are a few thousand characters or longer.

FM-indexes are crucial data structures in DNA alignment, but searching with them usually takes at least one random access per character in the query pattern.

FM-indexes are crucial data structures in DNA alignment, but searching with them usually takes at least one random access per character in the query pattern ...

FM-indexes are a crucial data structure in DNA alignment, but searching with them usually takes at least one random access per character in the query pattern.

Accelerated FM-index. FM-indexes are a crucial data structure in DNA alignment, but searching with them usually takes at least one random access per character ...

Aug 29, 2023 · In this paper we show that using prefix-free parsing - which takes parameters that let us tune the average length of the phrases - instead of induced suffix ...

Pfp-fm: an accelerated FM-index. 1 Dec 2024Algorithms for Molecular Biology19(1). Co-authors: Hong A, Oliva M, Köppl D ...3 more. DOI10.1186/s13015-024-00260-8.

Pfp-fm: an accelerated FM-index. FM-indexes are crucial data structures in DNA alignment, but searching with them usually takes at least one random access ...