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Konstantinos D. Tsirigos

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2020 – today

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2024
[j18]
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  - journals/jbcb/ChatziargyriSTLIB24
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Aikaterini G. Chatziargyri, Evangelia A. Stasi, Konstantinos D. Tsirigos, Zoi I. Litou, Vassiliki A. Iconomidou, Pantelis G. Bagos:
CW-PRED: Prediction of C-terminal surface anchoring sorting signals in bacteria and Archaea. J. Bioinform. Comput. Biol. 22(4): 2450021:1-2450021:18 (2024)
2023
[j17]
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  - journals/nar/OchoaHCSBMLMCFLTCTRBSKAOFGMGSTMRHYG23
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David Ochoa, Andrew Hercules, Miguel Carmona, Daniel Suveges, Jarrod Baker, Cinzia Malangone, Irene Lopez, Alfredo Miranda, Carlos Cruz-Castillo, Luca Fumis, Manuel Bernal Llinares, Kirill Tsukanov, Helena Cornu, Konstantinos D. Tsirigos, Olesya Razuvayevskaya, Annalisa Buniello, Jeremy Schwartzentruber, Mohd Anisul Karim, Bruno Ariano, Ricardo Esteban Martinez Osorio, Javier Ferrer, Xiangyu Ge, Sandra Machlitt-Northen, Asier Gonzalez-Uriarte, Shyamasree Saha, Santosh Tirunagari, Chintan Mehta, Juan María Roldán-Romero, Stuart Horswell, Sarah Young, Maya Ghoussaini, David G. Hulcoop, Ian Dunham, Ellen M. McDonagh:
The next-generation Open Targets Platform: reimagined, redesigned, rebuilt. Nucleic Acids Res. 51(D1): 1353-1359 (2023)
2022
[j16]
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  - journals/nar/QuagliaMSHPCPLP22
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Federica Quaglia, Bálint Mészáros, Edoardo Salladini, András Hatos, Rita Pancsa, Lucía B. Chemes, Mátyás Pajkos, Tamas Lazar, Samuel Peña-Díaz, Jaime Santos, Veronika Ács, Nazanin Farahi, Erzsébet Fichó, Maria Cristina Aspromonte, Claudio Bassot, Anastasia Chasapi, Norman E. Davey, Radoslav Davidovic, Laszlo Dobson, Arne Elofsson, Gábor Erdös, Pascale Gaudet, Michelle G. Giglio, Juliana Glavina, Javier Iserte, Valentín Iglesias, Zsófia L. Kálmán, Matteo Lambrughi, Emanuela Leonardi, Sonia Longhi, Sandra Macedo-Ribeiro, Emiliano Maiani, Julia Marchetti, Cristina Marino Buslje, Attila Meszaros, Alexander Miguel Monzon, Giovanni Minervini, Suvarna Nadendla, Juliet F. Nilsson, Marián Novotný, Christos A. Ouzounis, Nicolas Palopoli, Elena Papaleo, Pedro J. Barbosa Pereira, Gabriele Pozzati, Vasilis J. Promponas, Jordi Pujols, Alma Carolina Sanchez Rocha, Martin Salas, Luciana Rodriguez Sawicki, Éva Schád, Aditi Shenoy, Tamás Szaniszló, Konstantinos D. Tsirigos, Nevena Veljkovic, Gustavo D. Parisi, Salvador Ventura, Zsuzsanna Dosztányi, Peter Tompa, Silvio C. E. Tosatto, Damiano Piovesan:
DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation. Nucleic Acids Res. 50(D1): 480-487 (2022)
2021
[j15]
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  - journals/fbinf/RoumiaTTTHB21
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Ahmed F. Roumia, Konstantinos D. Tsirigos, Margarita C. Theodoropoulou, Ioannis A. Tamposis, Stavros J. Hamodrakas, Pantelis G. Bagos:
OMPdb: A Global Hub of Beta-Barrel Outer Membrane Proteins. Frontiers Bioinform. 1 (2021)

2010 – 2019

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2019
[j14]
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  - journals/bioinformatics/TamposisTTKB19
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Ioannis A. Tamposis, Konstantinos D. Tsirigos, Margarita C. Theodoropoulou, Panagiota I. Kontou, Pantelis G. Bagos:
Semi-supervised learning of Hidden Markov Models for biological sequence analysis. Bioinform. 35(13): 2208-2215 (2019)
[j13]
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Ioannis A. Tamposis, Konstantinos D. Tsirigos, Margarita C. Theodoropoulou, Panagiota I. Kontou, Georgios N. Tsaousis, Dimitra Sarantopoulou, Zoi I. Litou, Pantelis G. Bagos:
JUCHMME: a Java Utility for Class Hidden Markov Models and Extensions for biological sequence analysis. Bioinform. 35(24): 5309-5312 (2019)
2018
[j12]
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Ioannis A. Tamposis, Margarita C. Theodoropoulou, Konstantinos D. Tsirigos, Pantelis G. Bagos:
Extending hidden Markov models to allow conditioning on previous observations. J. Bioinform. Comput. Biol. 16(5): 1850019:1-1850019:21 (2018)
2017
[j11]
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Niki L. Dimou, Konstantinos D. Tsirigos, Arne Elofsson, Pantelis G. Bagos:
GWAR: robust analysis and meta-analysis of genome-wide association studies. Bioinform. 33(10): 1521-1527 (2017)
[j10]
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  - journals/nar/PiovesanTMNQOAD17
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Damiano Piovesan, Francesco Tabaro, Ivan Micetic, Marco Necci, Federica Quaglia, Christopher J. Oldfield, Maria Cristina Aspromonte, Norman E. Davey, Radoslav Davidovic, Zsuzsanna Dosztányi, Arne Elofsson, Alessandra Gasparini, András Hatos, Andrey V. Kajava, Lajos Kalmár, Emanuela Leonardi, Tamas Lazar, Sandra Macedo-Ribeiro, Mauricio Macossay-Castillo, Attila Meszaros, Giovanni Minervini, Nikoletta Murvai, Jordi Pujols, Daniel B. Roche, Edoardo Salladini, Éva Schád, Antoine Schramm, Beáta Szabó, Ágnes Tantos, Fiorella Tonello, Konstantinos D. Tsirigos, Nevena Veljkovic, Salvador Ventura, Wim F. Vranken, Per Warholm, Vladimir N. Uversky, A. Keith Dunker, Sonia Longhi, Peter Tompa, Silvio C. E. Tosatto:
DisProt 7.0: a major update of the database of disordered proteins. Nucleic Acids Res. 45(Database-Issue): D219-D227 (2017)
2016
[j9]
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Christoph Peters, Konstantinos D. Tsirigos, Nanjiang Shu, Arne Elofsson:
Improved topology prediction using the terminal hydrophobic helices rule. Bioinform. 32(8): 1158-1162 (2016)
[j8]
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Sikander Hayat, Christoph Peters, Nanjiang Shu, Konstantinos D. Tsirigos, Arne Elofsson:
Inclusion of dyad-repeat pattern improves topology prediction of transmembrane β-barrel proteins. Bioinform. 32(10): 1571-1573 (2016)
[j7]
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Konstantinos D. Tsirigos, Arne Elofsson, Pantelis G. Bagos:
PRED-TMBB2: improved topology prediction and detection of beta-barrel outer membrane proteins. Bioinform. 32(17): 665-671 (2016)
2015
[j6]
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Patricia C. Babbitt, Pantelis G. Bagos, Amos Bairoch, Alex Bateman, Arnaud Chatonnet, Mark Jinan Chen, David J. Craik, Robert D. Finn, David E. Gloriam, Daniel H. Haft, Bernard Henrissat, Gemma L. Holliday, Vignir Ísberg, Quentin Kaas, David Landsman, Nicolas Lenfant, Gerard Manning, Nozomi Nagano, Narayanaswamy Srinivasan, Claire O'Donovan, Kim D. Pruitt, Ramanathan Sowdhamini, Neil D. Rawlings, Milton H. Saier Jr., Joanna L. Sharman, Michael Spedding, Konstantinos D. Tsirigos, Åke Västermark, Gerrit Vriend:
Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat. Database J. Biol. Databases Curation 2015 (2015)
[j5]
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  - journals/nar/TsirigosPSKE15
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Konstantinos D. Tsirigos, Christoph Peters, Nanjiang Shu, Lukas Käll, Arne Elofsson:
The TOPCONS web server for consensus prediction of membrane protein topology and signal peptides. Nucleic Acids Res. 43(Webserver-Issue): W401-W407 (2015)
2012
[c1]
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  - conf/setn/FimereliTLLBH12
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Danai K. Fimereli, Konstantinos D. Tsirigos, Zoi I. Litou, Theodore D. Liakopoulos, Pantelis G. Bagos, Stavros J. Hamodrakas:
CW-PRED: A HMM-Based Method for the Classification of Cell Wall-Anchored Proteins of Gram-Positive Bacteria. SETN 2012: 285-290
2011
[j4]
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Konstantinos D. Tsirigos, Pantelis G. Bagos, Stavros J. Hamodrakas:
OMPdb: a database of β-barrel outer membrane proteins from Gram-negative bacteria. Nucleic Acids Res. 39(Database-Issue): 324-331 (2011)
2010
[j3]
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  - journals/bioinformatics/TsaousisTALBH10
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Georgios N. Tsaousis, Konstantinos D. Tsirigos, Xanthi D. Andrianou, Theodore D. Liakopoulos, Pantelis G. Bagos, Stavros J. Hamodrakas:
ExTopoDB: a database of experimentally derived topological models of transmembrane proteins. Bioinform. 26(19): 2490-2492 (2010)
[j2]
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  - journals/bioinformatics/BagosNLT10
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Pantelis G. Bagos, Elisanthi P. Nikolaou, Theodore D. Liakopoulos, Konstantinos D. Tsirigos:
Combined prediction of Tat and Sec signal peptides with hidden Markov models. Bioinform. 26(22): 2811-2817 (2010)

2000 – 2009

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2008
[j1]
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Zoi I. Litou, Pantelis G. Bagos, Konstantinos D. Tsirigos, Theodore D. Liakopoulos, Stavros J. Hamodrakas:
Prediction of Cell Wall Sorting Signals in Gram-Positive bacteria with a Hidden Markov Model: Application to Complete genomes. J. Bioinform. Comput. Biol. 6(2): 387-401 (2008)

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