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ORCIDMark H. Ellisman
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2020 – today
- 2023
[j25]Sofia Farina
, Valérie Voorsluijs, Sonja Fixemer, David S. Bouvier, Susanne Claus, Mark H. Ellisman, Stéphane P. A. Bordas, Alexander Skupin:
Mechanistic multiscale modelling of energy metabolism in human astrocytes reveals the impact of morphology changes in Alzheimer's Disease. PLoS Comput. Biol. 19(9) (2023)- 2020
- [c25]Matthew Madany, Kyle Marcus, Steven Peltier, Mark H. Ellisman, Ilkay Altintas:
NeuroKube: An Automated and Autoscaling Neuroimaging Reconstruction Framework using Cloud Native Computing and A.I. IEEE BigData 2020: 320-330
2010 – 2019
- 2017
- [j24]Chris Churas, Alex J. Perez, Hiroyuki Hakozaki, Willy Wong, David Lee, Steven Peltier, Mark H. Ellisman:
Probability Map Viewer: near real-time probability map generator of serial block electron microscopy collections. Bioinform. 33(19): 3145-3147 (2017) - [j23]Cibele Vieira Falkenberg, Evren U. Azeloglu, Mark Stothers, Thomas J. Deerinck, Yibang Chen, John C. He, Mark H. Ellisman, James C. Hone, Ravi Iyengar, Leslie M. Loew:
Fragility of foot process morphology in kidney podocytes arises from chaotic spatial propagation of cytoskeletal instability. PLoS Comput. Biol. 13(3) (2017) - 2016
- [c24]Albert F. Lawrence, Tsvi Katchalski, Alex J. Perez, Mark H. Ellisman:
Biological Systems Through the Informational Lens. ICCS 2016: 650-661 - 2015
- [j22]Vijay Rajagopal, Gregory Bass, Cameron G. Walker, David J. Crossman, Amorita Petzer, Anthony Hickey, Ivo Siekmann, Masahiko Hoshijima, Mark H. Ellisman, Edmund J. Crampin, Christian Soeller:
Examination of the Effects of Heterogeneous Organization of RyR Clusters, Myofibrils and Mitochondria on Ca2+ Release Patterns in Cardiomyocytes. PLoS Comput. Biol. 11(9) (2015) - 2014
- [c23]Michael Morehead, Quinn Jones, Jared Blatt, Paul Holcomb, Jürgen P. Schultz, Thomas A. DeFanti, Mark H. Ellisman, Gianfranco Doretto, George A. Spirou:
Poster: BrainTrek - An immersive environment for investigating neuronal tissue. 3DUI 2014: 157-158 - [c22]Ruijuan Chen, Xiaohua Wan, Ilkay Altintas, Jianwu Wang, Daniel Crawl, Sebastien Phan, Albert F. Lawrence, Mark H. Ellisman:
EPiK-a Workflow for Electron Tomography in Kepler. ICCS 2014: 2295-2305 - 2013
- [j21]Richard J. Giuly, Keun-Young Kim, Mark H. Ellisman:
DP2: Distributed 3D image segmentation using micro-labor workforce. Bioinform. 29(10): 1359-1360 (2013) - [j20]David N. Orloff, Janet H. Iwasa, Maryann E. Martone, Mark H. Ellisman, Caroline M. Kane:
The cell: an image library-CCDB: a curated repository of microscopy data. Nucleic Acids Res. 41(Database-Issue): 1241-1250 (2013) - [j19]Elizabeth Jurrus, Shigeki Watanabe, Richard J. Giuly, António R. C. Paiva, Mark H. Ellisman, Erik M. Jorgensen, Tolga Tasdizen:
Semi-Automated Neuron Boundary Detection and Nonbranching Process Segmentation in Electron Microscopy Images. Neuroinformatics 11(1): 5-29 (2013) - [j18]Xiaohua Wan, Sebastien Phan, Albert F. Lawrence, Fa Zhang, Renmin Han, Zhiyong Liu, Mark H. Ellisman:
Iterative Methods in Large Field Electron Microscope Tomography. SIAM J. Sci. Comput. 35(5) (2013) - [c21]Ting Liu, Mojtaba Seyedhosseini, Mark H. Ellisman, Tolga Tasdizen:
Watershed merge forest classification for electron microscopy image stack segmentation. ICIP 2013: 4069-4073 - [c20]Mojtaba Seyedhosseini, Mark H. Ellisman, Tolga Tasdizen:
Segmentation of mitochondria in electron microscopy images using algebraic curves. ISBI 2013: 860-863 - [c19]Cory Jay Jones, Ting Liu, Mark H. Ellisman, Tolga Tasdizen:
Semi-automatic neuron segmentation in electron microscopy images via sparse labeling. ISBI 2013: 1304-1307 - [c18]Cory Jay Jones, Mojtaba Seyedhosseini, Mark H. Ellisman, Tolga Tasdizen:
Neuron segmentation in electron microscopy images using partial differential equations. ISBI 2013: 1457-1460 - 2012
- [j17]Richard J. Giuly, Maryann E. Martone, Mark H. Ellisman:
Method: automatic segmentation of mitochondria utilizing patch classification, contour pair classification, and automatically seeded level sets. BMC Bioinform. 13: 29 (2012) - [c17]Ting Liu, Elizabeth Jurrus, Mojtaba Seyedhosseini, Mark H. Ellisman, Tolga Tasdizen:
Watershed merge tree classification for electron microscopy image segmentation. ICPR 2012: 133-137 - [c16]Albert F. Lawrence, Sebastien Phan, Mark H. Ellisman:
Electron Tomography and Multiscale Biology. TAMC 2012: 109-130 - [c15]Vadim Astakhov, Anita E. Bandrowski, Amarnath Gupta, A. W. Kulungowski, Jeffrey S. Grethe, James Bouwer, T. Molin, V. Rowley, S. Penticoff, Masako Terada, W. Wong, Hiroyuki Hakozaki, O. Kwon, Maryann E. Martone, Mark H. Ellisman:
Prototype of Kepler Processing Workflows For Microscopy And Neuroinformatics. ICCS 2012: 1595-1603 - 2011
- [j16]Shulei Sun, Jing Chen, Weizhong Li, Ilkay Altintas, Abel W. Lin, Steven Peltier, Karen I. Stocks, Eric E. Allen, Mark H. Ellisman, Jeffrey S. Grethe, John C. Wooley:
Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: the CAMERA resource. Nucleic Acids Res. 39(Database-Issue): 546-551 (2011) - [c14]Chris Mungall, David Anderson, Anita E. Bandrowski, Brian A. Canada, Andrew Chatr-aryamontri, Keith C. Cheng, P. Michael Conn, Kara Dolinski, Mark H. Ellisman, Janan T. Eppig, Jeffrey S. Grethe, Joseph W. Kemnitz, Shawn Iadonato, Stephen D. Larson, Charles Magness, Maryann E. Martone, Mike Tyers, Carlo Torniai, Olga G. Troyanskaya, Judith Turner, Monte Westerfield, Melissa A. Haendel:
An Ontology-Based Approach to Linking Model Organisms and Resources to Human Diseases. ICBO 2011 - [c13]Mojtaba Seyedhosseini, Ritwik Kumar, Elizabeth Jurrus, Rick Giuly, Mark H. Ellisman, Hanspeter Pfister, Tolga Tasdizen:
Detection of Neuron Membranes in Electron Microscopy Images Using Multi-scale Context and Radon-Like Features. MICCAI (1) 2011: 670-677 - [p4]Abel W. Lin, Ilkay Altintas, Chris Churas, Madhusudan Gujral, Jeffrey S. Grethe, Mark H. Ellisman:
Case Study on the Use of REST Architectural Principles for Scientific Analysis: CAMERA - Community Cyberinfrastructure for Advanced Microbial Ecology Research and Analysis. REST: From Research to Practice 2011: 319-338 - 2010
- [c12]Ilkay Altintas, Abel W. Lin, Jing Chen, Chris Churas, Madhusudan Gujral, Shulei Sun, Weizhong Li, Ramil Manansala, Mayya Sedova, Jeffrey S. Grethe, Mark H. Ellisman:
CAMERA 2.0: A Data-centric Metagenomics Community Infrastructure Driven by Scientific Workflows. SERVICES 2010: 352-359
2000 – 2009
- 2008
- [p3]Maryann E. Martone, Ilya Zaslavsky, Amarnath Gupta, Asif Memon, Joshua Tran, Willy Wong, Lisa Fong, Stephen D. Larson, Mark H. Ellisman:
The Smart Atlas: Spatial and Semantic Strategies for Multiscale Integration of Brain Data. Anatomy Ontologies for Bioinformatics 2008: 267-286 - 2007
- [j15]Yolanda Gil, Ewa Deelman, Mark H. Ellisman, Thomas Fahringer, Geoffrey C. Fox, Dennis Gannon, Carole A. Goble, Miron Livny, Luc Moreau, Jim Myers:
Examining the Challenges of Scientific Workflows. Computer 40(12): 24-32 (2007) - [p2]Abel W. Lin, Steven T. Peltier, Jeffrey S. Grethe, Mark H. Ellisman:
Case Studies on the Use of Workflow Technologies for Scientific Analysis: The Biomedical Informatics Research Network and the Telescience Project. Workflows for e-Science, Scientific Workflows for Grids 2007: 109-125 - 2006
- [j14]N. Taesombot, Frank C. Uyeda, Andrew A. Chien, Larry Smarr, Thomas A. DeFanti, Philip M. Papadopoulos, Jason Leigh, Mark H. Ellisman, John A. Orcutt:
The OptIPuter: high-performance, QoS-guaranteed network service for emerging E-science applications. IEEE Commun. Mag. 44(5): 38-45 (2006) - [j13]Rajvikram Singh, Nicholas Schwarz, Nut Taesombut, David Lee, Byungil Jeong, Luc Renambot, Abel W. Lin, Ruth West, Hiromu Otsuka, Sei Naito, Steven Peltier, Maryann E. Martone, Kazunori Nozaki, Jason Leigh, Mark H. Ellisman:
Real-time multi-scale brain data acquisition, assembly, and analysis using an end-to-end OptIPuter. Future Gener. Comput. Syst. 22(8): 1032-1039 (2006) - [j12]Diana L. Price, Sunny K. Chow, Natalie A. B. MacLean, Hiroyuki Hakozaki, Steven Peltier, Maryann E. Martone, Mark H. Ellisman:
High-resolution large-scale mosaic imaging using multiphoton microscopy to characterize transgenic mouse models of human neurological disorders. Neuroinformatics 4(1): 65-80 (2006) - [c11]Vadim Astakhov, Amarnath Gupta, Jeffrey S. Grethe, Edward Ross, David Little, Aylin Yilmaz, Xufei Qian, Simone Santini, Maryann E. Martone, Mark H. Ellisman:
Semantically Based Data Integration Environment for Biomedical Research. CBMS 2006: 171-176 - [c10]Adam Lathers, Mei-Hui Su, A. W. Kulungowski, Abel W. Lin, Gaurang Mehta, Steven Peltier, Ewa Deelman, Mark H. Ellisman:
Enabling parallel scientific applications with workflow tools. CLADE 2006: 55-60 - [c9]Ron Kikinis, Tina Kapur, Martha Elizabeth Shenton, Jeffrey S. Grethe, Mark H. Ellisman:
"Big Science" and Schizophrenia. ISBI 2006: 804-805 - 2005
- [j11]Gina E. Sosinsky, Thomas J. Deerinck, Rocco Greco, Casey H. Buitenhuys, Thomas M. Bartol, Mark H. Ellisman:
Development of a model for microphysiological simulations - Small nodes of ranvier from peripheral nerves of mice reconstructed by electron tomography. Neuroinformatics 3(2): 133-162 (2005) - [c8]Abel W. Lin, Lu Dai, Khim Ung, Steven Peltier, Mark H. Ellisman:
The Telescience Project: Application to Middleware Interaction Components. CBMS 2005: 543-548 - [c7]Toyokazu Akiyama, Kazunori Nozaki, Seiichi Kato, Shinji Shimojo, Steven Peltier, Abel W. Lin, Tomas E. Molina, George Yang, David Lee, Mark H. Ellisman, Kiyokazu Yoshida, Hirotaro Mori:
Scientific grid activities in Cybermedia Center, Osaka University. CCGRID 2005: 463-470 - [c6]Abel W. Lin, Lu Dai, Khim Ung, Jeff Mock, Steven Peltier, Mark H. Ellisman:
The Telescience Tools: Version 2.0. e-Science 2005: 56-63 - [c5]Tomas E. Molina, George Yang, Abel W. Lin, Steven Peltier, Mark H. Ellisman:
A Generalized Service-Oriented Architecture for Remote Control of Scientific Imaging Instruments. e-Science 2005: 550-556 - [c4]Jeffrey S. Grethe, Chaitan Baru, Amarnath Gupta, Mark James, Bertram Ludäscher, Maryann E. Martone, Philip M. Papadopoulos, Steven Peltier, Arcot Rajasekar, Simone Santini, Ilya Zaslavsky, Mark H. Ellisman:
Biomedical Informatics Research Network: Building a National Collaboratory to Hasten the Derivation of New Understanding and Treatment of Disease. HealthGrid 2005: 100-109 - 2004
- [j10]Mark H. Ellisman, Michael Brady, David Hart, Fang-Pang Lin, Matthias S. Müller, Larry Smarr:
The emerging role of biogrids. Commun. ACM 47(11): 52-57 (2004) - [j9]Henri Casanova, Francine Berman, Thomas M. Bartol, Erhan Gokcay, Terrence J. Sejnowski, Adam Birnbaum, Jack J. Dongarra, Michelle Miller, Mark H. Ellisman, Marcio Faerman, Graziano Obertelli, Richard Wolski, Stuart M. Pomerantz, Joel R. Stiles:
The Virtual Instrument: Support for Grid-Enabled Mcell Simulations. Int. J. High Perform. Comput. Appl. 18(1): 3-17 (2004) - [p1]Mark H. Ellisman, Steven Peltier:
Medical Data Federation. The Grid 2, 2nd Edition 2004: 109-120 - 2003
- [j8]Harvey B. Newman, Mark H. Ellisman, John A. Orcutt:
Data-intensive e-science frontier research. Commun. ACM 46(11): 68-77 (2003) - [j7]Erik Viirre, Mark H. Ellisman:
Vertigo in Virtual Reality with Haptics: Case Report. Cyberpsychology Behav. Soc. Netw. 6(4): 429-431 (2003) - [j6]David Lee, Abel W. Lin, Thomas Hutton, Toyokazu Akiyama, Shinji Shimojo, Fang-Pang Lin, Steven Peltier, Mark H. Ellisman:
Global Telescience featuring IPv6 at iGrid2002. Future Gener. Comput. Syst. 19(6): 1031-1039 (2003) - [j5]Steven Peltier, Abel W. Lin, David Lee, Stephen A. Mock, Stephan Lamont, Tomas E. Molina, Mona Wong, Lu Dai, Maryann E. Martone, Mark H. Ellisman:
The Telescience Portal for advanced tomography applications. J. Parallel Distributed Comput. 63(5): 539-550 (2003) - [j4]Maryann E. Martone, Shenglan Zhang, Amarnath Gupta, Xufei Qian, Haiyun He, Diana L. Price, Mona Wong, Simone Santini, Mark H. Ellisman:
The cell-centered database - A database for multiscale structural and protein localization data from light and electron microscopy. Neuroinformatics 1(4): 379-395 (2003) - [c3]Joel R. Stiles, W. C. Ford, J. M. Pattillo, Thomas E. Deerinck, Mark H. Ellisman, Thomas M. Bartol, Terrence J. Sejnowski:
Spatially Realistic Computational Physiology: Past, Present and Future. PARCO 2003: 685-694 - 2002
- [c2]José-Jesús Fernández, Albert F. Lawrence, Javier Roca Piera, Inmaculada García, Mark H. Ellisman, José María Carazo:
High Performance Computing in Electron Microscope Tomography of Complex Biological Structures. VECPAR 2002: 166-180 - 2000
- [c1]Shava Smallen, Walfredo Cirne, Jaime Frey, Francine Berman, Richard Wolski, Mei-Hui Su, Carl Kesselman, Stephen J. Young, Mark H. Ellisman:
Combining Workstations and Supercomputers to Support Grid Applications: The Parallel Tomography Experience. Heterogeneous Computing Workshop 2000: 241-252
1990 – 1999
- 1998
- [j3]Reagan W. Moore, Thomas A. Prince, Mark H. Ellisman:
Data-Intensive Computing and Digital Libraries. Commun. ACM 41(11): 56-62 (1998) - 1996
- [j2]Stephen J. Young, Gary Guo You Fan, David Hessler, Stephan Lamont, T. Todd Elvins, Martin Hadida-Hassan, Gary Hanyzewski, James W. Durkin, Philip M. Hubbard, Gordon L. Kindlmann, Eric Wong, Donald P. Greenberg, Sidney Karin, Mark H. Ellisman:
Implementing a Collaboratory for Microscopic Digital Anatomy. Int. J. High Perform. Comput. Appl. 10(2-3): 170-181 (1996) - 1992
- [j1]Philip J. Mercurio, T. Todd Elvins, Stephen J. Young, Philip S. Cohen, Kevin R. Fall, Mark H. Ellisman:
The Distributed Laboratory - An Interactive Visualization Environment for Electron Microscopy and 3D Imaging. Commun. ACM 35(6): 54-63 (1992)
Coauthor Index
Steven Peltier
aka: Steven T. Peltier
aka: Steven T. Peltier
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