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Marcus Oswald

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2020 – today

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2022
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Kulwadee Thanamit, Franziska Hörhold, Marcus Oswald, Rainer König:
Linear programming based gene expression model (LPM-GEM) predicts the carbon source for Bacillus subtilis. BMC Bioinform. 23(1): 226 (2022)
2020
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Franziska Hörhold, David Eisel, Marcus Oswald, Amol Kolte, Daniela Röll, Wolfram Osen, Stefan B. Eichmüller, Rainer König:
Reprogramming of macrophages employing gene regulatory and metabolic network models. PLoS Comput. Biol. 16(2) (2020)

2010 – 2019

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2019
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Alexandra Poos, Theresa Kordaß, Amol Kolte, Volker Ast, Marcus Oswald, Karsten Rippe, Rainer König:
Modelling TERT regulation across 19 different cancer types based on the MIPRIP 2.0 gene regulatory network approach. BMC Bioinform. 20(1): 737 (2019)
2014
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Theresa Schacht, Marcus Oswald, Roland Eils, Stefan B. Eichmüller, Rainer König:
Estimating the activity of transcription factors by the effect on their target genes. Bioinform. 30(17): 401-407 (2014)
[j18]
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Rosario M. Piro, Stefan Wiesberg, Gunnar Schramm, Nico Rebel, Marcus Oswald, Roland Eils, Gerhard Reinelt, Rainer König:
Network topology-based detection of differential gene regulation and regulatory switches in cell metabolism and signaling. BMC Syst. Biol. 8: 56 (2014)
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József Békési, Gábor Galambos, Michael N. Jung, Marcus Oswald, Gerhard Reinelt:
A branch-and-bound algorithm for the coupled task problem. Math. Methods Oper. Res. 80(1): 47-81 (2014)
[j16]
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Apichat Suratanee, Martin H. Schaefer, Matthew J. Betts, Zita Soons, Heiko A. Mannsperger, Nathalie Harder, Marcus Oswald, Markus Gipp, Ellen Ramminger, Guillermo Marcus Martinez, Reinhard Männer, Karl Rohr, Erich E. Wanker, Robert B. Russell, Miguel A. Andrade-Navarro, Roland Eils, Rainer König:
Characterizing Protein Interactions Employing a Genome-Wide siRNA Cellular Phenotyping Screen. PLoS Comput. Biol. 10(9) (2014)
2012
[j15]
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Marcus Oswald, Gerhard Reinelt, Stefan Wiesberg:
Exact solution of the 2-dimensional grid arrangement problem. Discret. Optim. 9(3): 189-199 (2012)
[j14]
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Angel Corberán, Marcus Oswald, Isaac Plana, Gerhard Reinelt, José M. Sanchis:
New results on the Windy Postman Problem. Math. Program. 132(1-2): 309-332 (2012)
2011
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Steffen Rebennack, Marcus Oswald, Dirk Oliver Theis, Hanna Seitz, Gerhard Reinelt, Panos M. Pardalos:
A Branch and Cut solver for the maximum stable set problem. J. Comb. Optim. 21(4): 434-457 (2011)
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Alberto Caprara, Marcus Oswald, Gerhard Reinelt, Robert Schwarz, Emiliano Traversi:
Optimal linear arrangements using betweenness variables. Math. Program. Comput. 3(3): 261-280 (2011)
2010
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Gunnar Schramm, Stefan Wiesberg, Nicolle Diessl, Anna-Lena Kranz, Vitalia Sagulenko, Marcus Oswald, Gerhard Reinelt, Frank Westermann, Roland Eils, Rainer König:
PathWave: discovering patterns of differentially regulated enzymes in metabolic pathways. Bioinform. 26(9): 1225-1231 (2010)
[j10]
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Christoph Buchheim, Frauke Liers, Marcus Oswald:
Speeding up IP-based algorithms for constrained quadratic 0-1 optimization. Math. Program. 124(1-2): 513-535 (2010)

2000 – 2009

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2009
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József Békési, Gábor Galambos, Marcus Oswald, Gerhard Reinelt:
Improved analysis of an algorithm for the coupled task problem with UET jobs. Oper. Res. Lett. 37(2): 93-96 (2009)
[j8]
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Marcus Oswald, Gerhard Reinelt:
The simultaneous consecutive ones problem. Theor. Comput. Sci. 410(21-23): 1986-1992 (2009)
[c10]
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Eva-Maria Surmann, Gunnar Schramm, Stefan Wiesberg, Marcus Oswald, Gerhard Reinelt, Roland Eils, Rainer König:
Analyzing the regulation of metabolic pathways in human breast cancer. LWA 2009: KDML:111-118
2008
[j7]
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Kitiporn Plaimas, Jan-Phillip Mallm, Marcus Oswald, Fabian Svara, Victor Sourjik, Roland Eils, Rainer König:
Machine learning based analyses on metabolic networks supports high-throughput knockout screens. BMC Syst. Biol. 2: 67 (2008)
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Christoph Buchheim, Frauke Liers, Marcus Oswald:
Local cuts revisited. Oper. Res. Lett. 36(4): 430-433 (2008)
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Christoph Buchheim, Frauke Liers, Marcus Oswald:
A Basic Toolbox for Constrained Quadratic 0/1 Optimization. WEA 2008: 249-262
2007
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Marcus Oswald, Gerhard Reinelt, Dirk Oliver Theis:
On the graphical relaxation of the symmetric traveling salesman polytope. Math. Program. 110(1): 175-193 (2007)
[c8]
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Kitiporn Plaimas, Marcus Oswald, Roland Eils, Rainer König:
Integrating Genomic and Transcriptomic Data into Graph Based Approaches for Defining Essential Reactions in the Metabolic Network of Escherichia Coli. LWA 2007: 55-60
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Frank Noé, Marcus Oswald, Gerhard Reinelt:
Optimizing in Graphs with Expensive Computation of Edge Weights. OR 2007: 435-440
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Jonghyun Suh, Sungwon Jung, Martin Pfeifle, Khoa T. Vo, Marcus Oswald, Gerhard Reinelt:
Compression of Digital Road Networks. SSTD 2007: 423-440
2006
[j4]
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Rainer König, Gunnar Schramm, Marcus Oswald, Hanna Seitz, Sebastian Sager, Marc Zapatka, Gerhard Reinelt, Roland Eils:
Discovering functional gene expression patterns in the metabolic network of Escherichia coli with wavelets transforms. BMC Bioinform. 7: 119 (2006)
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Frank Noé, Marcus Oswald, Gerhard Reinelt, Stefan Fischer, Jeremy C. Smith:
Computing Best Transition Pathways in High-Dimensional Dynamical Systems: Application to the Alpha_L \leftrightharpoons Beta \leftrightharpoons Alpha_R Transitions in Octaalanine. Multiscale Model. Simul. 5(2): 393-419 (2006)
[c5]
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Gunnar Schramm, Marcus Oswald, Hanna Seitz, Sebastian Sager, Marc Zapatka, Gerhard Reinelt, Roland Eils, Rainer König:
Pattern recognition of gene expression data on biochemical networks with simple wavelet transforms. LWA 2006: 350-355
2005
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Marcus Oswald, Gerhard Reinelt, Dirk Oliver Theis:
Not Every GTSP Facet Induces an STSP Facet. IPCO 2005: 468-482
2004
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Dino Ahr, József Békési, Gábor Galambos, Marcus Oswald, Gerhard Reinelt:
An exact algorithm for scheduling identical coupled tasks. Math. Methods Oper. Res. 59(2): 193-203 (2004)
[p1]
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Marcus Oswald, Gerhard Reinelt:
Computing Optimal Consecutive Ones Matrices. The Sharpest Cut 2004: 173-183
2003
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Marcus Oswald:
Weighted Consecutive Ones Problems. Heidelberg University, Germany, 2003
[j1]
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Marcus Oswald, Gerhard Reinelt:
The weighted consecutive ones problem for a fixed number of rows or columns. Oper. Res. Lett. 31(3): 350-356 (2003)
2001
[c3]
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Marcus Oswald, Gerhard Reinelt:
Constructing New Facets of the Consecutive Ones Polytope. Combinatorial Optimization 2001: 147-157
2000
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Marcus Oswald, Gerhard Reinelt:
Polyhedral Aspects of the Consecutive Ones Problem. COCOON 2000: 373-382

1990 – 1999

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1998
[c1]
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Thomas Christof, Marcus Oswald, Gerhard Reinelt:
Consecutive Ones and a Betweenness Problem in Computational Biology. IPCO 1998: 213-228

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