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2020 – today
- 2023
[j25]Bin Huang, Tingwen Fan, Kaiyue Wang, Haicang Zhang, Chungong Yu, Shuyu Nie, Yangshuo Qi, Wei-Mou Zheng, Jian Han, Zheng Fan, Shiwei Sun, Sheng Ye, Huaiyi Yang, Dongbo Bu:
Accurate and efficient protein sequence design through learning concise local environment of residues. Bioinform. 39(3) (2023)- [j24]Bin Huang
, Lupeng Kong, Chao Wang, Fusong Ju, Qi Zhang, Jianwei Zhu, Tiansu Gong, Haicang Zhang, Chungong Yu, Wei-Mou Zheng, Dongbo Bu:
Protein Structure Prediction: Challenges, Advances, and the Shift of Research Paradigms. Genom. Proteom. Bioinform. 21(5): 913-925 (2023) - 2022
- [j23]Fusong Ju, Jianwei Zhu, Qi Zhang, Guozheng Wei, Shiwei Sun, Wei-Mou Zheng, Dongbo Bu:
Seq-SetNet: directly exploiting multiple sequence alignment for protein secondary structure prediction. Bioinform. 38(4): 990-996 (2022) - [j22]Lupeng Kong, Fusong Ju, Wei-Mou Zheng, Jianwei Zhu, Shiwei Sun, Jinbo Xu, Dongbo Bu:
ProALIGN: Directly Learning Alignments for Protein Structure Prediction via Exploiting Context-Specific Alignment Motifs. J. Comput. Biol. 29(2): 92-105 (2022) - 2020
- [j21]Qi Zhang, Jianwei Zhu, Fusong Ju, Lupeng Kong, Shiwei Sun, Wei-Mou Zheng, Dongbo Bu:
ISSEC: inferring contacts among protein secondary structure elements using deep object detection. BMC Bioinform. 21(1): 503 (2020)
2010 – 2019
- 2019
- [j20]Haicang Zhang, Qi Zhang, Fusong Ju, Jianwei Zhu, Yujuan Gao, Ziwei Xie, Minghua Deng, Shiwei Sun, Wei-Mou Zheng, Dongbo Bu:
Predicting protein inter-residue contacts using composite likelihood maximization and deep learning. BMC Bioinform. 20(1): 537:1-537:11 (2019) - [j19]Haicang Zhang, Qi Zhang, Fusong Ju, Jianwei Zhu, Yujuan Gao, Ziwei Xie, Minghua Deng, Shiwei Sun, Wei-Mou Zheng, Dongbo Bu:
Correction to: Predicting protein inter-residue contacts using composite likelihood maximization and deep learning. BMC Bioinform. 20(1): 616:1-616:5 (2019) - [j18]Chao Wang, Yi Wei, Haicang Zhang, Lupeng Kong, Shiwei Sun, Wei-Mou Zheng, Dongbo Bu:
Constructing effective energy functions for protein structure prediction through broadening attraction-basin and reverse Monte Carlo sampling. BMC Bioinform. 20-S(3): 99-108 (2019) - 2018
- [i2]Haicang Zhang, Qi Zhang, Fusong Ju, Jianwei Zhu, Shiwei Sun, Yujuan Gao, Ziwei Xie, Minghua Deng, Shiwei Sun, Wei-Mou Zheng, Dongbo Bu:
Predicting protein inter-residue contacts using composite likelihood maximization and deep learning. CoRR abs/1809.00083 (2018) - 2017
- [j17]Jianwei Zhu, Haicang Zhang, Shuai Cheng Li, Chao Wang, Lupeng Kong, Shiwei Sun, Wei-Mou Zheng, Dongbo Bu:
Improving protein fold recognition by extracting fold-specific features from predicted residue-residue contacts. Bioinform. 33(23): 3749-3757 (2017) - [j16]Hai'e Gong, Haicang Zhang, Jianwei Zhu, Chao Wang, Shiwei Sun, Wei-Mou Zheng, Dongbo Bu:
Improving prediction of burial state of residues by exploiting correlation among residues. BMC Bioinform. 18(S-3): 165-175 (2017) - 2016
- [j15]Chao Wang, Haicang Zhang, Wei-Mou Zheng, Dong Xu, Jianwei Zhu, Bing Wang, Kang Ning, Shiwei Sun, Shuai Cheng Li, Dongbo Bu:
FALCON@home: a high-throughput protein structure prediction server based on remote homologue recognition. Bioinform. 32(3): 462-464 (2016) - 2015
- [i1]Hai-Jun Zhou, Wei-Mou Zheng:
Loop-corrected belief propagation for lattice spin models. CoRR abs/1505.03504 (2015) - 2014
- [j14]Jianfeng Zhu, Wei-Mou Zheng:
Self-organizing approach for meta-genomes. Comput. Biol. Chem. 53: 118-124 (2014) - 2011
- [j13]Mingfu Shao, Sheng Wang, Chao Wang, Xiongying Yuan, Shuai Li, Wei-Mou Zheng, Dongbo Bu:
Incorporating Ab Initio energy into threading approaches for protein structure prediction. BMC Bioinform. 12(S-1): S54 (2011)
2000 – 2009
- 2009
- [j12]Gao Shan, Wei-Mou Zheng:
Counting of oligomers in Sequences Generated by Markov Chains for DNA Motif Discovery. J. Bioinform. Comput. Biol. 7(1): 39-54 (2009) - 2008
- [j11]Sheng Wang, Wei-Mou Zheng:
ClEPaps: Fast Pair Alignment of protein Structures Based on conformational Letters. J. Bioinform. Comput. Biol. 6(2): 347-366 (2008) - [c1]Wei-Mou Zheng:
The Use of a Conformational Alphabet for Fast Alignment of Protein Structures. ISBRA 2008: 331-342 - 2007
- [j10]Heng Li, Liang Guan, Tao Liu, Yiran Guo, Wei-Mou Zheng, Gane Ka-Shu Wong, Jun Wang:
A cross-species alignment tool (CAT). BMC Bioinform. 8 (2007) - 2006
- [j9]Ge Gao, Yingfu Zhong, Anyuan Guo, Qihui Zhu, Wen Tang, Wei-Mou Zheng, Xiaocheng Gu, Liping Wei, Jingchu Luo:
DRTF: a database of rice transcription factors. Bioinform. 22(10): 1286-1287 (2006) - [j8]Xin Liu, Wei-Mou Zheng:
An Amino Acid Substitution Matrix for Protein Conformation Identification. J. Bioinform. Comput. Biol. 4(3): 769-782 (2006) - [j7]Heng Li, Avril Coghlan, Jue Ruan, Lachlan James M. Coin, Jean-Karim Hériché, Lara Osmotherly, Ruiqiang Li, Tao Liu, Zhang Zhang, Lars Bolund, Gane Ka-Shu Wong, Wei-Mou Zheng, Paramvir Dehal, Jun Wang, Richard Durbin:
TreeFam: a curated database of phylogenetic trees of animal gene families. Nucleic Acids Res. 34(Database-Issue): 572-580 (2006) - 2005
- [j6]Wei-Mou Zheng:
Relation between weight matrix and substitution matrix: motif search by similarity. Bioinform. 21(7): 938-943 (2005) - [j5]Wei-Mou Zheng:
Protein secondary structure prediction by combining hidden Markov models and sliding window scores. Int. J. Bioinform. Res. Appl. 1(4): 420-428 (2005) - [j4]Heng Li, Jin-Song Liu, Zhao Xu, Jiao Jin, Lin Fang, Lei Gao, Yu-Dong Li, Zi-Xing Xing, Shao-Gen Gao, Tao Liu, Hai-Hong Li, Yan Li, Li-Jun Fang, Hui-Min Xie, Wei-Mou Zheng, Bailin Hao:
Test Data Sets and Evaluation of Gene Prediction Programs on the Rice Genome. J. Comput. Sci. Technol. 20(4): 446-453 (2005) - [j3]Wei-Mou Zheng, Xin Liu:
A Protein Structural Alphabet and Its Substitution Matrix CLESUM. Trans. Comp. Sys. Biology 2: 59-67 (2005) - 2004
- [j2]Wei-Mou Zheng:
Clustering of Amino Acids for Protein Secondary Structure Prediction. J. Bioinform. Comput. Biol. 2(2): 333-342 (2004) - [j1]Xin Liu, Li-Mei Zhang, Wei-Mou Zheng:
Prediction of Protein Secondary Structure Based on Residue Pairs. J. Bioinform. Comput. Biol. 2(2): 343-352 (2004)
Coauthor Index
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