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2020 – today
- 2021
[j18]Stephen J. Kiniry
, Ciara E. Judge, Audrey M. Michel, Pavel V. Baranov:
Trips-Viz: an environment for the analysis of public and user-generated ribosome profiling data. Nucleic Acids Res. 49(Webserver-Issue): 662-670 (2021)
2010 – 2019
- 2019
- [j17]Stephen J. Kiniry, Patrick B. F. O'Connor, Audrey M. Michel, Pavel V. Baranov:
Trips-Viz: a transcriptome browser for exploring Ribo-Seq data. Nucleic Acids Res. 47(Database-Issue): D847-D852 (2019) - 2018
- [j16]Md. Rezaul Karim, Audrey M. Michel, Achille Zappa, Pavel V. Baranov, Ratnesh Sahay, Dietrich Rebholz-Schuhmann:
Improving data workflow systems with cloud services and use of open data for bioinformatics research. Briefings Bioinform. 19(5): 1035-1050 (2018) - [j15]Audrey M. Michel, Stephen J. Kiniry, Patrick B. F. O'Connor, James P. A. Mullan, Pavel V. Baranov:
GWIPS-viz: 2018 update. Nucleic Acids Res. 46(Database-Issue): D823-D830 (2018) - 2014
- [j14]Audrey M. Michel, Dmitry E. Andreev, Pavel V. Baranov:
Computational approach for calculating the probability of eukaryotic translation initiation from ribo-seq data that takes into account leaky scanning. BMC Bioinform. 15: 380 (2014) - [j13]Audrey M. Michel, Gearoid Fox, Anmol M. Kiran, Christof De Bo, Patrick B. F. O'Connor, Stephen M. Heaphy, James P. A. Mullan, Claire A. Donohue, Desmond G. Higgins, Pavel V. Baranov:
GWIPS-viz: development of a ribo-seq genome browser. Nucleic Acids Res. 42(Database-Issue): 859-864 (2014) - 2013
- [j12]Patrick B. F. O'Connor, Gene-Wei Li, Jonathan S. Weissman, John F. Atkins, Pavel V. Baranov:
rRNA: mRNA pairing alters the length and the symmetry of mRNA-protected fragments in ribosome profiling experiments. Bioinform. 29(12): 1488-1491 (2013) - [j11]Ivan Antonov, Pavel V. Baranov, Mark Borodovsky:
GeneTack database: genes with frameshifts in prokaryotic genomes and eukaryotic mRNA sequences. Nucleic Acids Res. 41(Database-Issue): 152-156 (2013) - [j10]Anmol M. Kiran, John J. O'Mahony, Komal Sanjeev, Pavel V. Baranov:
Darned in 2013: inclusion of model organisms and linking with Wikipedia. Nucleic Acids Res. 41(Database-Issue): 258-261 (2013) - 2012
- [j9]Virag Sharma, David P. Murphy, Gregory M. Provan, Pavel V. Baranov:
CodonLogo: a sequence logo-based viewer for codon patterns. Bioinform. 28(14): 1935-1936 (2012) - 2010
- [j8]Anmol M. Kiran, Pavel V. Baranov:
DARNED: a DAtabase of RNa EDiting in humans. Bioinform. 26(14): 1772-1776 (2010) - [j7]Michaël Bekaert, Andrew E. Firth, Yan Zhang, Vadim N. Gladyshev, John F. Atkins, Pavel V. Baranov:
Recode-2: new design, new search tools, and many more genes. Nucleic Acids Res. 38(Database-Issue): 69-74 (2010)
2000 – 2009
- 2008
- [j6]Michaël Bekaert, Ivaylo P. Ivanov, John F. Atkins, Pavel V. Baranov:
Ornithine decarboxylase antizyme finder (OAF): Fast and reliable detection of antizymes with frameshifts in mRNAs. BMC Bioinform. 9 (2008) - 2006
- [j5]Michaël Bekaert, John F. Atkins, Pavel V. Baranov:
ARFA: a program for annotating bacterial release factor genes, including prediction of programmed ribosomal frameshifting. Bioinform. 22(20): 2463-2465 (2006) - 2003
- [j4]Pavel V. Baranov, Olga L. Gurvich, Andrew W. Hammer, Raymond F. Gesteland, John F. Atkins:
RECODE 2003. Nucleic Acids Res. 31(1): 87-89 (2003) - 2001
- [j3]Pavel V. Baranov, Olga L. Gurvich, Olivier Fayet, Marie Françoise Prère, W. Allen Miller, Raymond F. Gesteland, John F. Atkins, Michael C. Giddings:
RECODE: a database of frameshifting, bypassing and codon redefinition utilized for gene expression. Nucleic Acids Res. 29(1): 264-267 (2001)
1990 – 1999
- 1999
- [j2]Pavel V. Baranov, Andrew V. Kubarenko, Olga L. Gurvich, Tatyana A. Shamolina, Richard Brimacombe:
The Database of Ribosomal Cross-links: an update. Nucleic Acids Res. 27(1): 184-185 (1999) - 1998
- [j1]Pavel V. Baranov, Petr V. Sergiev, Olga A. Dontsova, Alexey A. Bogdanov, Richard Brimacombe:
The Database of Ribosomal Cross links (DRC). Nucleic Acids Res. 26(1): 187-189 (1998)
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