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ORCIDIlias Tagkopoulos
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2020 – today
- 2024
[j14]Ilias Tagkopoulos
, J. Mason Earles, Danielle G. Lemay, Xin Liu, Nitin Nitin, Aaron D. Smith, Tarek I. Zohdi, Stephen F. Brown:
The AIFS Institute: Building a better food system through AI. AI Mag. 45(1): 89-93 (2024)- [j13]Jason Youn, Fangzhou Li, Gabriel Simmons, Shanghyeon Kim, Ilias Tagkopoulos:
FoodAtlas: Automated knowledge extraction of food and chemicals from literature. Comput. Biol. Medicine 181: 109072 (2024) - 2023
- [c11]Jason Youn, Ilias Tagkopoulos:
KGLM: Integrating Knowledge Graph Structure in Language Models for Link Prediction. *SEM@ACL 2023: 217-224 - [i4]Jason Youn, Fangzhou Li, Ilias Tagkopoulos:
Semi-Automated Construction of Food Composition Knowledge Base. CoRR abs/2301.11322 (2023) - 2022
- [j12]Ilias Tagkopoulos, Stephen F. Brown, Xin Liu, Qing Zhao, Tarek I. Zohdi, J. Mason Earles, Nitin Nitin, Daniel E. Runcie, Danielle G. Lemay, Aaron D. Smith, Pamela C. Ronald, Hao Feng, Gabriel David Youtsey:
Special report: AI Institute for next generation food systems (AIFS). Comput. Electron. Agric. 196: 106819 (2022) - [j11]Ameen Eetemadi, Ilias Tagkopoulos:
Algorithmic lifestyle optimization. J. Am. Medical Informatics Assoc. 30(1): 38-45 (2022) - [i3]Jason Youn, Ilias Tagkopoulos:
KGLM: Integrating Knowledge Graph Structure in Language Models for Link Prediction. CoRR abs/2211.02744 (2022) - 2020
- [j10]Jason Youn, Tarini Naravane, Ilias Tagkopoulos:
Using Word Embeddings to Learn a Better Food Ontology. Frontiers Artif. Intell. 3: 584784 (2020) - [c10]Albara Ah Ramli, Rex Liu, Rahul Krishnamoorthy, Vishal I B, Xiaoxiao Wang, Ilias Tagkopoulos, Xin Liu:
BWCNN: Blink to Word, a Real-Time Convolutional Neural Network Approach. ICIOT 2020: 133-140 - [i2]Albara Ah Ramli, Rex Liu, Rahul Krishnamoorthy, Vishal I B, Xiaoxiao Wang, Ilias Tagkopoulos, Xin Liu:
BWCNN: Blink to Word, a Real-Time Convolutional Neural Network Approach. CoRR abs/2006.01232 (2020)
2010 – 2019
- 2019
- [j9]Ameen Eetemadi, Ilias Tagkopoulos:
Genetic Neural Networks: an artificial neural network architecture for capturing gene expression relationships. Bioinform. 35(13): 2226-2234 (2019) - 2017
- [j8]Minseung Kim, Ameen Eetemadi, Ilias Tagkopoulos:
DeepPep: Deep proteome inference from peptide profiles. PLoS Comput. Biol. 13(9) (2017) - 2015
- [j7]Minseung Kim, Violeta Zorraquino, Ilias Tagkopoulos:
Microbial Forensics: Predicting Phenotypic Characteristics and Environmental Conditions from Large-Scale Gene Expression Profiles. PLoS Comput. Biol. 11(3) (2015) - [i1]Ameen Eetemadi, Ilias Tagkopoulos:
A Distribution Adaptive Framework for Prediction Interval Estimation Using Nominal Variables. CoRR abs/1511.05688 (2015) - 2014
- [j6]Hnin H. Aung, Athanasios Tsoukalas, John C. Rutledge, Ilias Tagkopoulos:
A systems biology analysis of brain microvascular endothelial cell lipotoxicity. BMC Syst. Biol. 8: 80 (2014) - [j5]Eren Gultepe, Jeffrey P. Green, Hien Nguyen, Jason Adams, Timothy E. Albertson, Ilias Tagkopoulos:
From vital signs to clinical outcomes for patients with sepsis: a machine learning basis for a clinical decision support system. J. Am. Medical Informatics Assoc. 21(2): 315-325 (2014) - 2013
- [j4]Andreas Pavlogiannis, Vadim Mozhayskiy, Ilias Tagkopoulos:
A flood-based information flow analysis and network minimization method for gene regulatory networks. BMC Bioinform. 14: 137 (2013) - 2012
- [j3]Vadim Mozhayskiy, Ilias Tagkopoulos:
Guided evolution of in silico microbial populations in complex environments accelerates evolutionary rates through a step-wise adaptation. BMC Bioinform. 13(S-10): S10 (2012) - [j2]Vadim Mozhayskiy, Ilias Tagkopoulos:
Horizontal gene transfer dynamics and distribution of fitness effects during microbial in silico evolution. BMC Bioinform. 13(S-10): S13 (2012) - [c9]Eren Gultepe, Hien Nguyen, Timothy E. Albertson, Ilias Tagkopoulos:
A Bayesian network for early diagnosis of sepsis patients: a basis for a clinical decision support system. ICCABS 2012: 1-5 - [c8]Linh Hunyh, Ilias Tagkopoulos:
A robust, library-based, optimization-driven method for automatic gene circuit design. ICCABS 2012: 1-6 - 2011
- [c7]Robert Miller, Vadim Mozhayskiy, Ilias Tagkopoulos, Kwan-Liu Ma:
EVEVis: A multi-scale visualization system for dense evolutionary data. BioVis 2011: 143-150 - [c6]Vadim Mozhayskiy, Ilias Tagkopoulos:
In Silico Evolution of Multi-scale Microbial Systems in the Presence of Mobile Genetic Elements and Horizontal Gene Transfer. ISBRA 2011: 262-273 - [c5]Vadim Mozhayskiy, Bob Miller, Kwan-Liu Ma, Ilias Tagkopoulos:
A scalable multi-scale framework for parallel simulation and visualization of microbial evolution. TG 2011: 7:1-7:8
2000 – 2009
- 2006
- [j1]Sun-Yuan Kung, Man-Wai Mak, Ilias Tagkopoulos:
Symmetric and Asymmetric Multi-modality Biclustering Analysis for Microarray Data Matrix. J. Bioinform. Comput. Biol. 4(2): 275-298 (2006) - 2005
- [c4]Ilias Tagkopoulos, Nikolai Slavov, Sun-Yuan Kung:
Multi-Class Biclustering and Classification Based on Modeling of Gene Regulatory Networks. BIBE 2005: 89-96 - [c3]Ilias Tagkopoulos:
A Transcriptional Approach to Gene Clustering. CIBCB 2005: 223-229 - [c2]Sun-Yuan Kung, Man-Wai Mak, Ilias Tagkopoulos:
Multi-Metric and Multi-Substructure Biclustering Analysis for Gene Expression Data. CSB 2005: 123-134 - 2003
- [c1]Ilias Tagkopoulos, Charles A. Zukowski, German Cavelier, Dimitris Anastassiou:
A custom FPGA for the simulation of gene regulatory networks. ACM Great Lakes Symposium on VLSI 2003: 132-135
Coauthor Index
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