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Ashwini Patil

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2020 – today

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2023
[j14]
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Alessio Del Conte, Adel Bouhraoua, Mahta Mehdiabadi, Damiano Clementel, Alexander Miguel Monzon, Alex S. Holehouse, Daniel A. Griffith, Ryan J. Emenecker, Ashwini Patil, Ronesh Sharma, Tatsuhiko Tsunoda, Alok Sharma, Yi Jun Tang, Bin Liu, Claudio Mirabello, Björn Wallner, Burkhard Rost, Dagmar Ilzhöfer, Maria Littmann, Michael Heinzinger, Lea I M. Krautheimer, Michael Bernhofer, Liam J. McGuffin, Isabelle Callebaut, Tristan Bitard Feildel, Jian Liu, Jianlin Cheng, Zhiye Guo, Jinbo Xu, Sheng Wang, Nawar Malhis, Jörg Gsponer, Chol-Song Kim, Kun-Sop Han, Myong-Chol Ma, Lukasz A. Kurgan, Sina Ghadermarzi, Akila Katuwawala, Bi Zhao, Zhenling Peng, Zhonghua Wu, Gang Hu, Kui Wang, Md. Tamjidul Hoque, Md Wasi Ul Kabir, Michele Vendruscolo, Pietro Sormanni, Min Li, Fuhao Zhang, Pengzhen Jia, Yida Wang, Michail Yu. Lobanov, Oxana V. Galzitskaya, Wim F. Vranken, Adrián Díaz, Thomas Litfin, Yaoqi Zhou, Jack Hanson, Kuldip K. Paliwal, Zsuzsanna Dosztányi, Gábor Erdös, Silvio C. E. Tosatto, Damiano Piovesan:
CAID prediction portal: a comprehensive service for predicting intrinsic disorder and binding regions in proteins. Nucleic Acids Res. 51(W1): 62-69 (2023)
2022
[j13]
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Sagar Sunkle, Krati Saxena, Ashwini Patil, Vinay Kulkarni:
AI-driven streamlined modeling: experiences and lessons learned from multiple domains. Softw. Syst. Model. 21(3): 1-23 (2022)
2021
[j12]
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Sagar Sunkle, Deepak Jain, Krati Saxena, Ashwini Patil, Tushita Singh, Beena Rai, Vinay Kulkarni:
Integrated "Generate, Make, and Test" for Formulated Products using Knowledge Graphs. Data Intell. 3(3): 340-375 (2021)
2020
[c6]
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Sagar Sunkle, Krati Saxena, Ashwini Patil, Vinay Kulkarni, Deepak Jain, Rinu Chacko, Beena Rai:
Information Extraction and Graph Representation for the Design of Formulated Products. CAiSE 2020: 433-448
[c5]
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Ashwini Patil, Sagar Sunkle, Vinay Kulkarni:
Checking, Generating, and Revising Safety Data Sheets using Globally Harmonized System Standards. EDOC 2020: 165-170
[c4]
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Krati Saxena, Ashwini Patil, Sagar Sunkle, Vinay Kulkarni:
Mining Heterogeneous Data for Formulation Design. ICDM (Workshops) 2020: 589-596

2010 – 2019

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2019
[j11]
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  - journals/bmcbi/SharmaSPT19
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Ronesh Sharma, Alok Sharma, Ashwini Patil, Tatsuhiko Tsunoda:
Discovering MoRFs by trisecting intrinsically disordered protein sequence into terminals and middle regions. BMC Bioinform. 19-S(13): 155-163 (2019)
[c3]
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Edwin Vans, Alok Sharma, Ashwini Patil, Daichi Shigemizu, Tatsuhiko Tsunoda:
Clustering of Small-Sample Single-Cell RNA-Seq Data via Feature Clustering and Selection. PRICAI (3) 2019: 445-456
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Ashwini Patil:
Protein-Protein Interaction Databases. Encyclopedia of Bioinformatics and Computational Biology (2) 2019: 849-855
2018
[j10]
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Ronesh Sharma, Gaurav Raicar, Tatsuhiko Tsunoda, Ashwini Patil, Alok Sharma:
OPAL: prediction of MoRF regions in intrinsically disordered protein sequences. Bioinform. 34(11): 1850-1858 (2018)
[j9]
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Phit Ling Tan, Yosvany López, Kenta Nakai, Ashwini Patil:
TimeXNet Web: identifying cellular response networks from diverse omics time-course data. Bioinform. 34(21): 3764-3765 (2018)
2016
[j8]
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Ronesh Sharma, Shiu Kumar, Tatsuhiko Tsunoda, Ashwini Patil, Alok Sharma:
Predicting MoRFs in protein sequences using HMM profiles. BMC Bioinform. 17(S-19): 251-258 (2016)
2015
[j7]
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Yosvany López, Kenta Nakai, Ashwini Patil:
HitPredict version 4: comprehensive reliability scoring of physical protein-protein interactions from more than 100 species. Database J. Biol. Databases Curation 2015 (2015)
2014
[j6]
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Ashwini Patil, Kenta Nakai:
TimeXNet: Identifying active gene sub-networks using time-course gene expression profiles. BMC Syst. Biol. 8(S-4): S2 (2014)
2013
[j5]
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Yosvany López, Ashwini Patil, Kenta Nakai:
Identification of novel motif patterns to decipher the promoter architecture of co-expressed genes in Arabidopsis thaliana. BMC Syst. Biol. 7(S-3): S10 (2013)
[j4]
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Ashwini Patil, Yutaro Kumagai, Kuo-ching Liang, Yutaka Suzuki, Kenta Nakai:
Linking Transcriptional Changes over Time in Stimulated Dendritic Cells to Identify Gene Networks Activated during the Innate Immune Response. PLoS Comput. Biol. 9(11) (2013)
2012
[c2]
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Ashwini Patil, Shunsuke Teraguchi, Huy Dinh, Kenta Nakai, Daron M. Standley:
Functional Annotation of Intrinsically Disordered Domains by Their Amino Acid Content Using IDD Navigator. Pacific Symposium on Biocomputing 2012: 164-175
2011
[j3]
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Ashwini Patil, Kenta Nakai, Haruki Nakamura:
HitPredict: a database of quality assessed protein-protein interactions in nine species. Nucleic Acids Res. 39(Database-Issue): 744-749 (2011)
[c1]
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Ashwini Patil, Ankit Shah, Sheetal Gaikwad, Akassh A. Mishra, Simranjit Singh Kohli, Sudhir Dhage:
Fault Tolerance in Cluster Computing System. 3PGCIC 2011: 408-412
2010
[j2]
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  - journals/bmcbi/TeraguchiPS10
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Shunsuke Teraguchi, Ashwini Patil, Daron M. Standley:
Intrinsically disordered domains deviate significantly from random sequences in mammalian proteins. BMC Bioinform. 11(S-7): S7 (2010)

2000 – 2009

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2005
[j1]
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Ashwini Patil, Haruki Nakamura:
Filtering high-throughput protein-protein interaction data using a combination of genomic features. BMC Bioinform. 6: 100 (2005)

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