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ORCIDManuel Cáceres
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- affiliation: University of Helsinki, Finland
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2020 – today
- 2024
[j8]Nicola Rizzo
, Manuel Cáceres, Veli Mäkinen:
Finding maximal exact matches in graphs. Algorithms Mol. Biol. 19(1): 10 (2024)- [j7]Manuel Cáceres, Massimo Cairo, Andreas Grigorjew, Shahbaz Khan, Brendan Mumey, Romeo Rizzi, Alexandru I. Tomescu, Lucia Williams:
Width Helps and Hinders Splitting Flows. ACM Trans. Algorithms 20(2): 13 (2024) - [c12]Manuel Cáceres, Brendan Mumey, Santeri Toivonen, Alexandru I. Tomescu:
Practical Minimum Path Cover. SEA 2024: 3:1-3:19 - 2023
- [b1]Manuel Cáceres:
Parameterized and Safe & Complete Graph Algorithms for Bioinformatics. University of Helsinki, Finland, 2023 - [j6]Jun Ma, Manuel Cáceres, Leena Salmela, Veli Mäkinen, Alexandru I. Tomescu:
Chaining for accurate alignment of erroneous long reads to acyclic variation graphs. Bioinform. 39(8) (2023) - [j5]Fernando H. C. Dias, Manuel Cáceres, Lucia Williams, Brendan Mumey, Alexandru I. Tomescu:
A safety framework for flow decomposition problems via integer linear programming. Bioinform. 39(10) (2023) - [c11]Manuel Cáceres:
Parameterized Algorithms for String Matching to DAGs: Funnels and Beyond. CPM 2023: 7:1-7:19 - [c10]Ruben Becker, Manuel Cáceres, Davide Cenzato, Sung-Hwan Kim, Bojana Kodric, Francisco Olivares, Nicola Prezza:
Sorting Finite Automata via Partition Refinement. ESA 2023: 15:1-15:15 - [c9]Manuel Cáceres:
Minimum Chain Cover in Almost Linear Time. ICALP 2023: 31:1-31:12 - [c8]Nicola Rizzo, Manuel Cáceres, Veli Mäkinen:
Chaining of Maximal Exact Matches in Graphs. SPIRE 2023: 353-366 - [c7]Nicola Rizzo, Manuel Cáceres, Veli Mäkinen:
Finding Maximal Exact Matches in Graphs. WABI 2023: 10:1-10:17 - [i14]Fernando H. C. Dias, Manuel Cáceres, Lucia Williams, Brendan Mumey, Alexandru I. Tomescu:
A Safety Framework for Flow Decomposition Problems via Integer Linear Programming. CoRR abs/2301.13245 (2023) - [i13]Nicola Rizzo, Manuel Cáceres, Veli Mäkinen:
Chaining of Maximal Exact Matches in Graphs. CoRR abs/2302.01748 (2023) - [i12]Manuel Cáceres:
Minimum Chain Cover in Almost Linear Time. CoRR abs/2305.02166 (2023) - [i11]Ruben Becker, Manuel Cáceres, Davide Cenzato, Sung-Hwan Kim, Bojana Kodric, Francisco Olivares, Nicola Prezza:
Sorting Finite Automata via Partition Refinement. CoRR abs/2305.05129 (2023) - [i10]Nicola Rizzo, Manuel Cáceres, Veli Mäkinen:
Finding Maximal Exact Matches in Graphs. CoRR abs/2305.09752 (2023) - [i9]Manuel Cáceres, Brendan Mumey, Santeri Toivonen, Alexandru I. Tomescu:
Minimum Path Cover: The Power of Parameterization. CoRR abs/2308.08960 (2023) - 2022
- [j4]Manuel Cáceres, Gonzalo Navarro:
Faster repetition-aware compressed suffix trees based on Block Trees. Inf. Comput. 285(Part): 104749 (2022) - [j3]Shahbaz Khan, Milla Kortelainen, Manuel Cáceres, Lucia Williams, Alexandru I. Tomescu:
Improving RNA Assembly via Safety and Completeness in Flow Decompositions. J. Comput. Biol. 29(12): 1270-1287 (2022) - [j2]Manuel Cáceres, Brendan Mumey, Edin Husic, Romeo Rizzi, Massimo Cairo, Kristoffer Sahlin, Alexandru I. Tomescu:
Safety in Multi-Assembly via Paths Appearing in All Path Covers of a DAG. IEEE ACM Trans. Comput. Biol. Bioinform. 19(6): 3673-3684 (2022) - [c6]Manuel Cáceres, Massimo Cairo, Andreas Grigorjew, Shahbaz Khan, Brendan Mumey, Romeo Rizzi, Alexandru I. Tomescu, Lucia Williams:
Width Helps and Hinders Splitting Flows. ESA 2022: 31:1-31:14 - [c5]Shahbaz Khan, Milla Kortelainen, Manuel Cáceres, Lucia Williams, Alexandru I. Tomescu:
Safety and Completeness in Flow Decompositions for RNA Assembly. RECOMB 2022: 177-192 - [c4]Manuel Cáceres, Massimo Cairo, Brendan Mumey, Romeo Rizzi, Alexandru I. Tomescu:
Sparsifying, Shrinking and Splicing for Minimum Path Cover in Parameterized Linear Time. SODA 2022: 359-376 - [i8]Shahbaz Khan, Milla Kortelainen, Manuel Cáceres, Lucia Williams, Alexandru I. Tomescu:
Safety and Completeness in Flow Decompositions for RNA Assembly. CoRR abs/2201.10372 (2022) - [i7]Manuel Cáceres, Massimo Cairo, Andreas Grigorjew, Shahbaz Khan, Brendan Mumey, Romeo Rizzi, Alexandru I. Tomescu, Lucia Williams:
Width Helps and Hinders Splitting Flows. CoRR abs/2207.02136 (2022) - [i6]Manuel Cáceres, Massimo Cairo, Brendan Mumey, Romeo Rizzi, Alexandru I. Tomescu:
Minimum Path Cover in Parameterized Linear Time. CoRR abs/2211.09659 (2022) - [i5]Manuel Cáceres:
Parameterized Algorithms for String Matching to DAGs: Funnels and Beyond. CoRR abs/2212.07870 (2022) - 2021
- [j1]Djamal Belazzougui, Manuel Cáceres, Travis Gagie, Pawel Gawrychowski, Juha Kärkkäinen, Gonzalo Navarro, Alberto Ordóñez Pereira, Simon J. Puglisi, Yasuo Tabei:
Block trees. J. Comput. Syst. Sci. 117: 1-22 (2021) - [c3]Manuel Cáceres, Massimo Cairo, Brendan Mumey, Romeo Rizzi, Alexandru I. Tomescu:
A Linear-Time Parameterized Algorithm for Computing the Width of a DAG. WG 2021: 257-269 - [i4]Manuel Cáceres, Massimo Cairo, Brendan Mumey, Romeo Rizzi, Alexandru I. Tomescu:
Sparsifying, Shrinking and Splicing for Minimum Path Cover in Parameterized Linear Time. CoRR abs/2107.05717 (2021) - 2020
- [c2]Manuel Cáceres, Simon J. Puglisi, Bella Zhukova:
Fast Indexes for Gapped Pattern Matching. SOFSEM 2020: 493-504 - [i3]Manuel Cáceres, Simon J. Puglisi, Bella Zhukova:
Fast Indexes for Gapped Pattern Matching. CoRR abs/2002.12662 (2020) - [i2]Manuel Cáceres, Massimo Cairo, Brendan Mumey, Romeo Rizzi, Alexandru I. Tomescu:
On the parameterized complexity of the Minimum Path Cover problem in DAGs. CoRR abs/2007.07575 (2020)
2010 – 2019
- 2019
- [c1]Manuel Cáceres, Gonzalo Navarro:
Faster Repetition-Aware Compressed Suffix Trees Based on Block Trees. SPIRE 2019: 434-451 - [i1]Manuel Cáceres, Gonzalo Navarro:
Faster Repetition-Aware Compressed Suffix Trees based on Block Trees. CoRR abs/1902.03274 (2019)
Coauthor Index
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