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2020 – today

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2024
[c25]
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Artemis Çapari, Hosein Azarbonyad, Georgios Tsatsaronis, Zubair Afzal, Judson Dunham, Jaap Kamps:
Knowledge Acquisition Passage Retrieval: Corpus, Ranking Models, and Evaluation Resources. CLEF (1) 2024: 74-87
[c24]
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Artemis Çapari, Hosein Azarbonyad, Zubair Afzal, Georgios Tsatsaronis:
Enhancing Scientific Document Simplification through Adaptive Retrieval and Generative Models. CLEF (Working Notes) 2024: 3206-3229
[c23]
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Dan Li, Vikrant Yadav, Zi Long Zhu, Maziar Moradi Fard, Zubair Afzal, George Tsatsaronis:
Scalable Patent Classification with Aggregated Multi-View Ranking. LREC/COLING 2024: 14336-14346
[c22]
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Artemis Çapari, Hosein Azarbonyad, Georgios Tsatsaronis, Zubair Afzal, Judson Dunham:
ScienceDirect Topic Pages: A Knowledge Base of Scientific Concepts Across Various Science Domains. SIGIR 2024: 2976-2980
2023
[c21]
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Artemis Çapari, Hosein Azarbonyad, Georgios Tsatsaronis, Zubair Afzal:
Elsevier at SimpleText: Passage Retrieval by Fine-tuning GPL on Scientific Documents. CLEF (Working Notes) 2023: 2923-2934
[c20]
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Hosein Azarbonyad, Zubair Afzal, George Tsatsaronis:
Generating Topic Pages for Scientific Concepts Using Scientific Publications. ECIR (2) 2023: 341-349
[c19]
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Dan Li, Zi Long Zhu, Janneke van de Loo, Agnes Masip Gomez, Vikrant Yadav, Georgios Tsatsaronis, Zubair Afzal:
Enhancing Extreme Multi-Label Text Classification: Addressing Challenges in Model, Data, and Evaluation. EMNLP (Industry Track) 2023: 313-321
[i2]
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  - journals/corr/abs-2304-11922
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Hosein Azarbonyad, Zubair Afzal, George Tsatsaronis:
Generating Topic Pages for Scientific Concepts Using Scientific Publications. CoRR abs/2304.11922 (2023)
2022
[c18]
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Yuan Li, Biaoyan Fang, Jiayuan He, Hiyori Yoshikawa, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Zubair Afzal, Zenan Zhai, Timothy Baldwin, Karin Verspoor:
Overview of ChEMU 2022 Evaluation Campaign: Information Extraction in Chemical Patents. CLEF 2022: 521-540
[c17]
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Yuan Li, Biaoyan Fang, Jiayuan He, Hiyori Yoshikawa, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Zubair Afzal, Zenan Zhai, Kojiro Machi, Masaharu Yoshioka, Youngrok Jang, Hosung Song, Junho Lee, Gyeonghun Kim, Yireun Kim, Stanley Jungkyu Choi, Honglak Lee, Kyunghoon Bae, Darshini Mahendran, Christina Tang, Bridget T. McInnes, Timothy Baldwin, Karin Verspoor:
Extended Overview of ChEMU 2022 Evaluation Campaign: Information Extraction in Chemical Patents. CLEF (Working Notes) 2022: 758-781
[c16]
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Yuan Li, Biaoyan Fang, Jiayuan He, Hiyori Yoshikawa, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Zenan Zhai, Zubair Afzal, Trevor Cohn, Timothy Baldwin, Karin Verspoor:
The ChEMU 2022 Evaluation Campaign: Information Extraction in Chemical Patents. ECIR (2) 2022: 400-407
[c15]
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Dan Li, Vikrant Yadav, Zubair Afzal, George Tsatsaronis:
Unsupervised Dense Retrieval for Scientific Articles. EMNLP (Industry Track) 2022: 313-321
[c14]
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Zi Long Zhu, Vikrant Yadav, Zubair Afzal, George Tsatsaronis:
Few-shot initializing of Active Learner via Meta-Learning. EMNLP (Findings) 2022: 1117-1133
2021
[j8]
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Jiayuan He, Dat Quoc Nguyen, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Ralph Hoessel, Zubair Afzal, Zenan Zhai, Biaoyan Fang, Hiyori Yoshikawa, Ameer Albahem, Lawrence Cavedon, Trevor Cohn, Timothy Baldwin, Karin Verspoor:
ChEMU 2020: Natural Language Processing Methods Are Effective for Information Extraction From Chemical Patents. Frontiers Res. Metrics Anal. 6: 654438 (2021)
[c13]
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Yuan Li, Biaoyan Fang, Jiayuan He, Hiyori Yoshikawa, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Zubair Afzal, Zenan Zhai, Timothy Baldwin, Karin Verspoor:
Overview of ChEMU 2021: Reaction Reference Resolution and Anaphora Resolution in Chemical Patents. CLEF 2021: 292-307
[c12]
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Yuan Li, Biaoyan Fang, Jiayuan He, Hiyori Yoshikawa, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Zubair Afzal, Zenan Zhai, Timothy Baldwin, Karin Verspoor:
Extended Overview of ChEMU 2021: Reaction Reference Resolution and Anaphora Resolution in Chemical Patents. CLEF (Working Notes) 2021: 693-709
[c11]
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Jiayuan He, Biaoyan Fang, Hiyori Yoshikawa, Yuan Li, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Zubair Afzal, Zenan Zhai, Lawrence Cavedon, Trevor Cohn, Timothy Baldwin, Karin Verspoor:
ChEMU 2021: Reaction Reference Resolution and Anaphora Resolution in Chemical Patents. ECIR (2) 2021: 608-615
2020
[c10]
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Jiayuan He, Dat Quoc Nguyen, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Ralph Hoessel, Zubair Afzal, Zenan Zhai, Biaoyan Fang, Hiyori Yoshikawa, Ameer Albahem, Lawrence Cavedon, Trevor Cohn, Timothy Baldwin, Karin Verspoor:
Overview of ChEMU 2020: Named Entity Recognition and Event Extraction of Chemical Reactions from Patents. CLEF 2020: 237-254
[c9]
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Jiayuan He, Dat Quoc Nguyen, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Ralph Hoessel, Zubair Afzal, Zenan Zhai, Biaoyan Fang, Hiyori Yoshikawa, Ameer Albahem, Jingqi Wang, Yuankai Ren, Zhi Zhang, Yaoyun Zhang, Mai Hoang Dao, Pedro Ruas, Andre Lamurias, Francisco M. Couto, Jenny Copara, Nona Naderi, Julien Knafou, Patrick Ruch, Douglas Teodoro, Daniel M. Lowe, John Mayfield, Abdullatif Köksal, Hilal Dönmez, Elif Özkirimli, Arzucan Özgür, Darshini Mahendran, Gabrielle Gurdin, Nastassja Lewinski, Christina Tang, Bridget T. McInnes, C. S. Malarkodi, Pattabhi Rk Rao, Sobha Lalitha Devi, Lawrence Cavedon, Trevor Cohn, Timothy Baldwin, Karin Verspoor:
An Extended Overview of the CLEF 2020 ChEMU Lab: Information Extraction of Chemical Reactions from Patents. CLEF (Working Notes) 2020
[c8]
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Zubair Afzal, Vikrant Yadav, Olga Fedorova, Vaishnavi Kandala, Janneke van de Loo, Saber A. Akhondi, Pascal Coupet, George Tsatsaronis:
CORA: A Deep Active Learning Covid-19 Relevancy Algorithm to Identify Core Scientific Articles. NLP4COVID@EMNLP 2020

2010 – 2019

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2018
[c7]
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Subhradeep Kayal, Zubair Afzal, George Tsatsaronis, Marius A. Doornenbal, Sophia Katrenko, Michelle Gregory:
A Framework to Automatically Extract Funding Information from Text. LOD 2018: 317-328
2017
[c6]
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Subhradeep Kayal, Zubair Afzal, George Tsatsaronis, Sophia Katrenko, Pascal Coupet, Marius A. Doornenbal, Michelle Gregory:
Tagging Funding Agencies and Grants in Scientific Articles using Sequential Learning Models. BioNLP 2017: 216-221
2016
[j7]
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Saber A. Akhondi, Ewoud Pons, Zubair Afzal, Herman van Haagen, Benedikt F. H. Becker, Kristina M. Hettne, Erik M. van Mulligen, Jan A. Kors:
Chemical entity recognition in patents by combining dictionary-based and statistical approaches. Database J. Biol. Databases Curation 2016 (2016)
[j6]
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Ewoud Pons, Benedikt F. H. Becker, Saber A. Akhondi, Zubair Afzal, Erik M. van Mulligen, Jan A. Kors:
Extraction of chemical-induced diseases using prior knowledge and textual information. Database J. Biol. Databases Curation 2016 (2016)
[c5]
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Zubair Afzal, Saber A. Akhondi, Herman H. H. B. M. van Haagen, Erik M. van Mulligen, Jan A. Kors:
Concept Recognition in French Biomedical Text Using Automatic Translation. CLEF 2016: 162-173
[c4]
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Erik M. van Mulligen, Zubair Afzal, Saber A. Akhondi, Dang Vo, Jan A. Kors:
Erasmus MC at CLEF eHealth 2016: Concept Recognition and Coding in French Texts. CLEF (Working Notes) 2016: 171-178
[c3]
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Zubair Afzal, George Tsatsaronis, Marius A. Doornenbal, Pascal Coupet, Michelle Gregory:
Learning Domain Labels Using Conceptual Fingerprints: An In-Use Case Study in the Neurology Domain. EKAW 2016: 731-745
2015
[c2]
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Zubair Afzal, Saber A. Akhondi, Herman van Haagen, Erik M. van Mulligen, Jan A. Kors:
Biomedical Concept Recognition in French Text Using Automatic Translation of English Terms. CLEF (Working Notes) 2015
2014
[j5]
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Ning Kang, Bharat Singh, Quoc-Chinh Bui, Zubair Afzal, Erik M. van Mulligen, Jan A. Kors:
Knowledge-based extraction of adverse drug events from biomedical text. BMC Bioinform. 15: 64 (2014)
[j4]
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Zubair Afzal, Ewoud Pons, Ning Kang, Miriam C. J. M. Sturkenboom, Martijn J. Schuemie, Jan A. Kors:
ContextD: an algorithm to identify contextual properties of medical terms in a Dutch clinical corpus. BMC Bioinform. 15: 373 (2014)
2013
[j3]
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Ning Kang, Bharat Singh, Zubair Afzal, Erik M. van Mulligen, Jan A. Kors:
Using rule-based natural language processing to improve disease normalization in biomedical text. J. Am. Medical Informatics Assoc. 20(5): 876-881 (2013)
[j2]
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Zubair Afzal, Martijn J. Schuemie, Jan C. van Blijderveen, Elif F. Sen, Miriam C. J. M. Sturkenboom, Jan A. Kors:
Improving sensitivity of machine learning methods for automated case identification from free-text electronic medical records. BMC Medical Informatics Decis. Mak. 13: 30 (2013)
2012
[j1]
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Ning Kang, Zubair Afzal, Bharat Singh, Erik M. van Mulligen, Jan A. Kors:
Using an ensemble system to improve concept extraction from clinical records. J. Biomed. Informatics 45(3): 423-428 (2012)
2010
[c1]
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Ning Kang, Rogier Barendse, Zubair Afzal, Bharat Singh, Martijn J. Schuemie, Erik M. van Mulligen, Jan A. Kors:
A Concept Annotation System for Clinical Records. SWAT4LS 2010
[i1]
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  - journals/corr/abs-1012-1663
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Ning Kang, Rogier Barendse, Zubair Afzal, Bharat Singh, Martijn J. Schuemie, Erik M. van Mulligen, Jan A. Kors:
A Concept Annotation System for Clinical Records. CoRR abs/1012.1663 (2010)

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