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David J. Galas

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2020 – today

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2023
[j24]
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Andrew Banman, Nikita A. Sakhanenko, James Kunert-Graf, David J. Galas:
ApoE Modifier Alleles for Alzheimer's Disease Discovered by Information Theory Dependency Measures: MIST Software Package. J. Comput. Biol. 30(3): 323-336 (2023)
2021
[j23]
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James M. Kunert-Graf, Nikita A. Sakhanenko, David J. Galas:
Optimized permutation testing for information theoretic measures of multi-gene interactions. BMC Bioinform. 22(1): 180 (2021)
[j22]
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David J. Galas, James Kunert-Graf, Lisa Uechi, Nikita A. Sakhanenko:
Toward an Information Theory of Quantitative Genetics. J. Comput. Biol. 28(6): 527-559 (2021)
2020
[j21]
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James Kunert-Graf, Nikita A. Sakhanenko, David J. Galas:
Partial Information Decomposition and the Information Delta: A Geometric Unification Disentangling Non-Pairwise Information. Entropy 22(12): 1333 (2020)

2010 – 2019

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2019
[j20]
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David J. Galas, Nikita A. Sakhanenko:
Symmetries among Multivariate Information Measures Explored Using Möbius Operators. Entropy 21(1): 88 (2019)
[j19]
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James M. Kunert-Graf, Kristian M. Eschenburg, David J. Galas, J. Nathan Kutz, Swati D. Rane, Bingni W. Brunton:
Extracting Reproducible Time-Resolved Resting State Networks Using Dynamic Mode Decomposition. Frontiers Comput. Neurosci. 13: 75 (2019)
[j18]
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Lisa Uechi, David J. Galas, Nikita A. Sakhanenko:
Multivariate Analysis of Data Sets with Missing Values: An Information Theory-Based Reliability Function. J. Comput. Biol. 26(2): 152-171 (2019)
[i6]
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  - journals/corr/abs-1908-09642
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David J. Galas:
The Group Theoretic Roots of Information I: permutations, symmetry, and entropy. CoRR abs/1908.09642 (2019)
2017
[j17]
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David J. Galas, T. Gregory Dewey, James Kunert-Graf, Nikita A. Sakhanenko:
Expansion of the Kullback-Leibler Divergence, and a New Class of Information Metrics. Axioms 6(2): 8 (2017)
[j16]
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James Kunert-Graf, Nikita A. Sakhanenko, David J. Galas:
Complexity and Vulnerability Analysis of the C. Elegans Gap Junction Connectome. Entropy 19(3): 104 (2017)
[j15]
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Nikita A. Sakhanenko, James Kunert-Graf, David J. Galas:
The Information Content of Discrete Functions and Their Application in Genetic Data Analysis. J. Comput. Biol. 24(12): 1153-1178 (2017)
[i5]
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David J. Galas, T. Gregory Dewey, James Kunert-Graf, Nikita A. Sakhanenko:
Expansion of the Kullback-Leibler Divergence, and a new class of information metrics. CoRR abs/1702.00033 (2017)
2016
[i4]
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David J. Galas, Nikita A. Sakhanenko:
Unifying formalism for multivariate information-related measures: Möbius operators on subset lattices. CoRR abs/1601.06780 (2016)
2015
[j14]
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Nikita A. Sakhanenko, David J. Galas:
Biological Data Analysis as an Information Theory Problem: Multivariable Dependence Measures and the Shadows Algorithm. J. Comput. Biol. 22(11): 1005-1024 (2015)
2014
[j13]
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David J. Galas, Nikita A. Sakhanenko, Alexander Skupin, Tomasz M. Ignac:
Describing the Complexity of Systems: Multivariable "Set Complexity" and the Information Basis of Systems Biology. J. Comput. Biol. 21(2): 118-140 (2014)
2013
[j12]
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Paul T. Shannon, Mark L. Grimes, Burak Kutlu, Jan J. Bot, David J. Galas:
RCytoscape: tools for exploratory network analysis. BMC Bioinform. 14: 217 (2013)
[i3]
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David J. Galas, Nikita A. Sakhanenko, Alexander Skupin, Tomasz M. Ignac:
Describing the complexity of systems: Multi-variable "set complexity" and hypergraphs. CoRR abs/1302.6932 (2013)
[i2]
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David J. Galas, Nikita A. Sakhanenko, Benjamin Keller:
On Lattices and the Dualities of Information Measures. CoRR abs/1308.0047 (2013)
2012
[j11]
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Tomasz M. Ignac, Nikita A. Sakhanenko, David J. Galas:
Complexity of networks II: The set complexity of edge-colored graphs. Complex. 17(5): 23-36 (2012)
[j10]
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Tomasz M. Ignac, Nikita A. Sakhanenko, David J. Galas:
Relations between the set-complexity and the structure of graphs and their sub-graphs. EURASIP J. Bioinform. Syst. Biol. 2012: 13 (2012)
[j9]
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Nikita A. Sakhanenko, David J. Galas:
Probabilistic Logic Methods and Some Applications to Biology and Medicine. J. Comput. Biol. 19(3): 316-336 (2012)
2011
[j8]
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Ji-Hoon Cho, Kai Wang, David J. Galas:
An integrative approach to inferring biologically meaningful gene modules. BMC Syst. Biol. 5: 117 (2011)
[j7]
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Nikita A. Sakhanenko, David J. Galas:
Complexity of networks I: The set-complexity of binary graphs. Complex. 17(2): 51-64 (2011)
2010
[j6]
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Nikita A. Sakhanenko, David J. Galas:
Markov Logic Networks in the Analysis of Genetic Data. J. Comput. Biol. 17(11): 1491-1508 (2010)
[j5]
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David J. Galas, Matti Nykter, Gregory W. Carter, Nathan D. Price, Ilya Shmulevich:
Biological information as set-based complexity. IEEE Trans. Inf. Theory 56(2): 667-677 (2010)

2000 – 2009

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2009
[j4]
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Gregory W. Carter, David J. Galas, Timothy Galitski:
Maximal Extraction of Biological Information from Genetic Interaction Data. PLoS Comput. Biol. 5(4) (2009)
2008
[i1]
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  - journals/corr/abs-0801-4024
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David J. Galas, Matti Nykter, Gregory W. Carter, Nathan D. Price, Ilya Shmulevich:
Set-based complexity and biological information. CoRR abs/0801.4024 (2008)
2003
[j3]
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Fan R. K. Chung, Linyuan Lu, T. Gregory Dewey, David J. Galas:
Duplication Models for Biological Networks. J. Comput. Biol. 10(5): 677-687 (2003)
2002
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Ashish Bhan, David J. Galas, T. Gregory Dewey:
A duplication growth model of gene expression networks. Bioinform. 18(11): 1486-1493 (2002)

1970 – 1979

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1979
[j1]
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Albert Schmitz, David J. Galas:
The interaction of RNA polymerase and lac repressor with the lac control region. Nucleic Acids Res. 6(1): 111-137 (1979)

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