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Eric Fanchon

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2020 – today

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2022
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Kapil Newar, Amith Zafal Abdulla, Hossein Salari, Eric Fanchon, Daniel Jost:
Dynamical modeling of the H3K27 epigenetic landscape in mouse embryonic stem cells. PLoS Comput. Biol. 18(9): 1010450 (2022)

2010 – 2019

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2019
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Thao Dang, Tommaso Dreossi, Eric Fanchon, Oded Maler, Carla Piazza, Alexandre Rocca:
Set-Based Analysis for Biological Modeling. Automated Reasoning for Systems Biology and Medicine 2019: 157-189
2018
[c11]
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Alexandre Rocca, Marcelo Forets, Victor Magron, Eric Fanchon, Thao Dang:
Occupation measure methods for modelling and analysis of biological hybrid systems. ADHS 2018: 181-186
2017
[j9]
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Igor Marín de Mas, Eric Fanchon, Balázs Papp, Susana G. Kalko, Josep Roca, Marta Cascante:
Molecular mechanisms underlying COPD-muscle dysfunction unveiled through a systems medicine approach. Bioinform. 33(1): 95-103 (2017)
[i2]
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Thao Dang, Eric Fanchon, Marcelo Forets, Victor Magron, Alexandre Rocca:
Occupation measure methods for modelling and analysis of biological hybrid automata. CoRR abs/1710.03158 (2017)
2016
[j8]
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Carles Foguet, Silvia Marin, Vitaly A. Selivanov, Eric Fanchon, Wai-Nang Paul Lee, Joan J. Guinovart, Pedro de Atauri, Marta Cascante:
HepatoDyn: A Dynamic Model of Hepatocyte Metabolism That Integrates 13C Isotopomer Data. PLoS Comput. Biol. 12(4) (2016)
[j7]
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Maximilien Gadouleau, Adrien Richard, Eric Fanchon:
Reduction and Fixed Points of Boolean Networks and Linear Network Coding Solvability. IEEE Trans. Inf. Theory 62(5): 2504-2519 (2016)
[c10]
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Alexandre Rocca, Thao Dang, Eric Fanchon, Jean Marc Moulis:
Application of the Reachability Analysis for the Iron Homeostasis Study. HSB 2016: 67-84
2015
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  - conf/iwbbio/MobiliaRCFT15
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Nicolas Mobilia, Alexandre Rocca, Samuel Chorlton, Eric Fanchon, Laurent Trilling:
Logical Modeling and Analysis of Regulatory Genetic Networks in a Non Monotonic Framework. IWBBIO (1) 2015: 599-612
2014
[c8]
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Alexandre Rocca, Thao Dang, Eric Fanchon:
Exploiting the Eigenstructure of Linear Systems to Speed up Reachability Computations. HSB 2014: 111-127
[i1]
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Maximilien Gadouleau, Adrien Richard, Eric Fanchon:
Reduction and Fixed Points of Boolean Networks and Linear Network Coding Solvability. CoRR abs/1412.5310 (2014)
2013
[j6]
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Julio Aracena, Jacques Demongeot, Eric Fanchon, Marco Montalva:
On the number of update digraphs and its relation with the feedback arc sets and tournaments. Discret. Appl. Math. 161(10-11): 1345-1355 (2013)
[c7]
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Nicolas Mobilia, Alexandre Donzé, Jean Marc Moulis, Eric Fanchon:
Producing a Set of Models for the Iron Homeostasis Network. HSB 2013: 92-98
2012
[c6]
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Fabien Corblin, Eric Fanchon, Laurent Trilling, Claudine Chaouiya, Denis Thieffry:
Automatic Inference of Regulatory and Dynamical Properties from Incomplete Gene Interaction and Expression Data. IPCAT 2012: 25-30
[c5]
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  - journals/corr/abs-1208-3851
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Nicolas Mobilia, Alexandre Donzé, Jean Marc Moulis, Eric Fanchon:
A Model of the Cellular Iron Homeostasis Network Using Semi-Formal Methods for Parameter Space Exploration. HSB 2012: 42-57
2011
[j5]
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Julio Aracena, Eric Fanchon, Marco Montalva, Mathilde Noual:
Combinatorics on update digraphs in Boolean networks. Discret. Appl. Math. 159(6): 401-409 (2011)
[j4]
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Vic Norris, Abdallah Zemirline, Patrick Amar, Jean Nicolas Audinot, Pascal Ballet, Eshel Ben-Jacob, Gilles Bernot, Guillaume Beslon, Armelle Cabin, Eric Fanchon, Jean-Louis Giavitto, Nicolas Glade, Patrick Greussay, Yohann Grondin, James A. Foster, Guillaume Hutzler, Jürgen Jost, François Képès, Olivier Michel, Franck Molina, Jacqueline Signorini, Pasquale Stano, Alain R. Thierry:
Computing with bacterial constituents, cells and populations: from bioputing to bactoputing. Theory Biosci. 130(3): 211-228 (2011)
[c4]
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Nicolas Glade, Adrien Elena, Fabien Corblin, Eric Fanchon, Jacques Demongeot, Hedi Ben Amor:
Determination, Optimization and Taxonomy of Regulatory Networks: The Example of Arabidopsis thaliana Flower Morphogenesis. AINA Workshops 2011: 488-494
2010
[j3]
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Fabien Corblin, Eric Fanchon, Laurent Trilling:
Applications of a formal approach to decipher discrete genetic networks. BMC Bioinform. 11: 385 (2010)

2000 – 2009

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2009
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Fabien Corblin, Sébastien Tripodi, Eric Fanchon, Delphine Ropers, Laurent Trilling:
A declarative constraint-based method for analyzing discrete genetic regulatory networks. Biosyst. 98(2): 91-104 (2009)
2007
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Fabien Corblin, Eric Fanchon, Laurent Trilling:
Modélisation de réseaux biologiques discrets en programmation logique par contraintes. Tech. Sci. Informatiques 26(1-2): 73-98 (2007)
2004
[c3]
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Eric Fanchon, Fabien Corblin, Laurent Trilling, Bastien Hermant, Danielle Gulino:
Modeling the Molecular Network Controlling Adhesion Between Human Endothelial Cells: Inference and Simulation Using Constraint Logic Programming. CMSB 2004: 104-118
2003
[c2]
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Caroline Brun, Marc Dymetman, Eric Fanchon, Stanislas Lhomme, Sylvain Pogodalla:
Semantically-based text authoring and the concurrent documentation of experimental protocols. ACM Symposium on Document Engineering 2003: 193-202
[c1]
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Caroline Brun, Marc Dymetman, Eric Fanchon, Stanislas Lhomme:
Controlled Authoring of Biological Experiment Reports. EACL 2003: 195-198

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