CNVScope: A Versatile Toolkit for Copy Number Variation Relationship Data Analysis and Visualization

Provides the ability to create interaction maps, discover CNV map domains (edges), gene annotate interactions, and create interactive visualizations of these CNV interaction maps.

Version:	3.7.2
Depends:	R (≥ 4.1.0), ggplot2
Imports:	tidyr, reshape2, magrittr, jointseg, shiny, RCurl, foreach, GenomicInteractions, Matrix, OpenImageR, biomaRt, matrixStats, plyr, data.table, dplyr, doParallel, stringr, rtracklayer, Hmisc
Suggests:	knitr, remotes, pwr, ComplexHeatmap, rmarkdown, HiCseg, igraph, visNetwork, circlize, plotly, InteractionSet, GenomicRanges, GenomicFeatures, IRanges, rslurm, shinythemes, shinycssloaders, DT, logging, heatmaply, S4Vectors, BiocManager, shinyjs, htmltools, htmlwidgets, GenomeInfoDb, BSgenome.Hsapiens.UCSC.hg19, tibble, smoothie
Published:	2022-03-30
DOI:	10.32614/CRAN.package.CNVScope
Author:	James Dalgeish, Yonghong Wang, Jack Zhu, Paul Meltzer
Maintainer:	James Dalgleish <james.dalgleish at nih.gov>
BugReports:	https://github.com/jamesdalg/CNVScope/issues/
License:	BSD_3_clause + file LICENSE
URL:	https://github.com/jamesdalg/CNVScope/
NeedsCompilation:	no
Materials:	NEWS
CRAN checks:	CNVScope results

Documentation:

Reference manual:	CNVScope.pdf
Vignettes:	Additional Visualization Examples Creating the TARGET Input matrix from public data Linear Regression/Postprocess Power Analysis

Downloads:

Package source:	CNVScope_3.7.2.tar.gz
Windows binaries:	r-devel: CNVScope_3.7.2.zip, r-release: CNVScope_3.7.2.zip, r-oldrel: CNVScope_3.7.2.zip
macOS binaries:	r-release (arm64): CNVScope_3.7.2.tgz, r-oldrel (arm64): CNVScope_3.7.2.tgz, r-release (x86_64): CNVScope_3.7.2.tgz, r-oldrel (x86_64): CNVScope_3.7.2.tgz
Old sources:	CNVScope archive

Linking:

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