Streamlined workflow from deconvolution of bulk RNA-seq data to downstream differential expression and gene-set enrichment analysis. Provide various visualization functions.
| Version: |
1.0.0 |
| Depends: |
dplyr, edgeR, foreach, ggplot2, R (≥ 2.10), Seurat |
| Imports: |
data.table, gtools, harmony, MASS, Matrix, NMF, reshape2, Biobase, mgcv, grDevices, glmGamPoi |
| Suggests: |
FARDEEP, reticulate, plotly, DESeq2, knitr, limma, nnls, preprocessCore, rmarkdown, scater, scran, SingleCellExperiment, doFuture, future, sctransform, Linnorm |
| Published: |
2024-03-22 |
| DOI: |
10.32614/CRAN.package.SCdeconR |
| Author: |
Yuanhang Liu [aut, cre] |
| Maintainer: |
Yuanhang Liu <liu.yuanhang at mayo.edu> |
| License: |
GPL (≥ 3) |
| URL: |
https://github.com/Liuy12/SCdeconR/,
https://liuy12.github.io/SCdeconR/ |
| NeedsCompilation: |
no |
| Materials: |
README NEWS |
| CRAN checks: |
SCdeconR results |