Debian Package Auto-Building

Buildd status for python-skbio (sid)

TrackerChangelogBugspackages.d.oSource

Package(s): Suite:
Compact mode Co-maintainers

ArchitectureVersionStatusForBuilddStateSectionLogsActions
Buildd exposure stats all 0.6.2-3Installed47d 17h 46mx86-grnet-03miscold | all (1)giveback
Buildd exposure stats amd64 0.6.2-3Installed47d 17h 47mx86-csail-01miscold | all (1)giveback
Buildd exposure stats arm64 0.6.2-3Installed47d 17h 47marm-conova-04miscold | all (1)giveback
Buildd exposure stats armel  0.6.2-3BD-Uninstallable47d 18h 23muncompiledmiscold | no loggiveback
Buildd exposure stats armhf  0.6.2-3BD-Uninstallable47d 18h 23muncompiledmiscold | no loggiveback
Buildd exposure stats i386  0.6.2-3BD-Uninstallable47d 18h 23muncompiledmiscold | no loggiveback
Buildd exposure stats mips64el 0.6.2-3Installed47d 17h 47mmipsel-osuosl-05miscold | all (1)giveback
Buildd exposure stats ppc64el 0.6.2-3Installed47d 17h 47mppc64el-conova-01miscold | all (1)giveback
Buildd exposure stats riscv64 0.6.2-3Installed47d 17h 6mrv-manda-02miscold | all (1)giveback
Buildd exposure stats s390x  0.6.2-3Build-Attempted47d 15h 49mzaniuncompiledmiscold | all (1)giveback
Buildd exposure stats alpha  0.6.2-3BD-Uninstallable47d 18h 8mout-of-datemiscold | no loggiveback
Buildd exposure stats hppa  0.6.2-3BD-Uninstallable47d 18h 8muncompiledmiscold | no loggiveback
Buildd exposure stats hurd-amd64  0.6.2-3BD-Uninstallable47d 18h 8muncompiledmiscold | no loggiveback
Buildd exposure stats hurd-i386  0.6.2-3BD-Uninstallable47d 18h 8muncompiledmiscold | no loggiveback
Buildd exposure stats loong64  0.6.2-3Build-Attempted1d 19h 53mloong64-loongson-02out-of-datemiscold | all (3)giveback
Buildd exposure stats m68k  0.6.2-3BD-Uninstallable47d 18h 8mout-of-datemiscold | no loggiveback
Buildd exposure stats powerpc  0.6.2-3BD-Uninstallable47d 18h 8muncompiledmiscold | no loggiveback
Buildd exposure stats ppc64  0.6.2-3Build-Attempted47d 18h 1mkapitsauncompiledmiscold | all (1)giveback
Buildd exposure stats sh4  0.6.2-3BD-Uninstallable47d 18h 8muncompiledmiscold | no loggiveback
Buildd exposure stats sparc64  0.6.2-3BD-Uninstallable47d 18h 8muncompiledmiscold | no loggiveback
Buildd exposure stats x32  0.6.2-3BD-Uninstallable47d 18h 8muncompiledmiscold | no loggiveback

Install getbuildlog: sudo apt install devscripts
Download latest python-skbio build logs: getbuildlog python-skbio last
Download all python-skbio build logs: getbuildlog python-skbio

Dependency installability problem for python-skbio on armel:

python-skbio build-depends on missing:
- architecture-is-64-bit:armel

Dependency installability problem for python-skbio on armhf:

python-skbio build-depends on missing:
- architecture-is-64-bit:armhf

Dependency installability problem for python-skbio on i386:

python-skbio build-depends on missing:
- architecture-is-64-bit:i386

Dependency installability problem for python-skbio on alpha:

libaudit1 depends on missing:
- libaudit-common:alpha (>= 1:4.0.2-2)

Dependency installability problem for python-skbio on hppa:

libaudit1 depends on missing:
- libaudit-common:hppa (>= 1:4.0.2-2)

Dependency installability problem for python-skbio on hurd-amd64:

python-skbio build-depends on missing:
- python3-biom-format:hurd-amd64

Dependency installability problem for python-skbio on hurd-i386:

python-skbio build-depends on:
- python3-sklearn:hurd-i386
python3-sklearn depends on missing:
- python3-sklearn-lib:hurd-i386 (>= 1.4.2+dfsg-6)

Dependency installability problem for python-skbio on m68k:

python-skbio build-depends on:
- python3-biom-format:m68k
python3-biom-format depends on:
- python3-pandas:m68k
python3-pandas depends on missing:
- python3-pandas-lib:m68k (>= 2.2.3+dfsg)

Dependency installability problem for python-skbio on powerpc:

libaudit1 depends on missing:
- libaudit-common:powerpc (>= 1:4.0.2-2)

Dependency installability problem for python-skbio on sh4:

python-skbio build-depends on missing:
- architecture-is-64-bit:sh4

Dependency installability problem for python-skbio on sparc64:

libaudit1 depends on missing:
- libaudit-common:sparc64 (>= 1:4.0.2-2)

Dependency installability problem for python-skbio on x32:

libaudit1 depends on missing:
- libaudit-common:x32 (>= 1:4.0.2-2)

Tail of log for python-skbio on s390x:

      |  ^~~~~~~
s390x-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>> build/temp.linux-s390x-cpython-312/skbio/stats/distance/_cutils.o -L/usr/lib/s390x-linux-gnu -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_skbio/build/skbio/stats/distance/_cutils.cpython-312-s390x-linux-gnu.so -fopenmp
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:311: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_skbio/build; python3.12 -m pytest --pyargs skbio
============================= test session starts ==============================
platform linux -- Python 3.12.6, pytest-8.3.3, pluggy-1.5.0
rootdir: /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_skbio/build
configfile: pyproject.toml
plugins: typeguard-4.3.0
collected 2793 items

skbio/alignment/tests/test_pairwise.py .........................         [  0%]
skbio/alignment/tests/test_path.py .................                     [  1%]
skbio/alignment/tests/test_ssw.py .....

Tail of log for python-skbio on loong64:

The above exception was the direct cause of the following exception:

Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/setup.py", line 25, in <module>
    import numpy as np
  File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in <module>
    raise ImportError(msg) from e
ImportError: Error importing numpy: you should not try to import numpy from
        its source directory; please exit the numpy source tree, and relaunch
        your python interpreter from there.
E: pybuild pybuild:389: configure: plugin distutils failed with: exit code=1: python3.13 setup.py config 
dh_auto_configure: error: pybuild --configure -i python{version} -p "3.13 3.12" returned exit code 13
make[1]: *** [debian/rules:21: override_dh_auto_configure] Error 25
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:16: binary-arch] Error 2

Tail of log for python-skbio on ppc64:

  File "/usr/lib/python3/dist-packages/_pytest/main.py", line 330 in pytest_cmdline_main
  File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103 in _multicall
  File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513 in __call__
  File "/usr/lib/python3/dist-packages/_pytest/config/__init__.py", line 175 in main
  File "/usr/lib/python3/dist-packages/_pytest/config/__init__.py", line 201 in console_main
  File "/usr/lib/python3/dist-packages/pytest/__main__.py", line 9 in <module>
  File "<frozen runpy>", line 88 in _run_code
  File "<frozen runpy>", line 198 in _run_module_as_main

Extension modules: _brotli, charset_normalizer.md, h5py._debian_h5py_serial._errors, h5py._debian_h5py_serial.defs, h5py._debian_h5py_serial._objects, h5py._debian_h5py_serial.h5, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, h5py._debian_h5py_serial.utils, h5py._debian_h5py_serial.h5t, h5py._debian_h5py_serial.h5s, h5py._debian_h5py_serial.h5ac, h5py._debian_h5py_serial.h5p, h5py._debian_h5py_serial.h5r, h5py._debian_h5py_serial._proxy, h5py._debian_h5py_serial._conv, h5py._debian_h5py_serial.h5z, h5py._debian_h5py_serial.h5a, h5py._debian_h5py_serial.h5d, h5py._debian_h5py_serial.h5ds, h5py._debian_h5py_serial.h5g, h5py._debian_h5py_serial.h5i, h5py._debian_h5py_serial.h5f, h5py._debian_h5py_serial.h5fd, h5py._debian_h5py_serial.h5pl, h5py._debian_h5py_serial.h5o, h5py._debian_h5py_serial.h5l, h5py._debian_h5py_serial._selector, h5py.atexit, h5py._errors, h5py.defs, h5py._objects, h5py.h5, h5py.utils, h5py.h5t, h5py.h5s, h5py.h5ac, h5py.h5p, h5py.h5r, h5py._proxy, h5py._conv, h5py.h5z, h5py.h5a, h5py.h5d, h5py.h5ds, h5py.h5g, h5py.h5i, h5py.h5f, h5py.h5fd, h5py.h5pl, h5py.h5o, h5py.h5l, h5py._selector, pandas._libs.tslibs.ccalendar, pandas._libs.tslibs.np_datetime, pandas._libs.tslibs.dtypes, pandas._libs.tslibs.base, pandas._libs.tslibs.nattype, pandas._libs.tslibs.timezones, pandas._libs.tslibs.fields, pandas._libs.tslibs.timedeltas, pandas._libs.tslibs.tzconversion, pandas._libs.tslibs.timestamps, pandas._libs.properties, pandas._libs.tslibs.offsets, pandas._libs.tslibs.strptime, pandas._libs.tslibs.parsing, pandas._libs.tslibs.conversion, pandas._libs.tslibs.period, pandas._libs.tslibs.vectorized, pandas._libs.ops_dispatch, pandas._libs.missing, pandas._libs.hashtable, pandas._libs.algos, pandas._libs.interval, pandas._libs.lib, pandas._libs.ops, pandas._libs.hashing, pandas._libs.arrays, pandas._libs.tslib, pandas._libs.sparse, pandas._libs.internals, pandas._libs.indexing, pandas._libs.index, pandas._libs.writers, pandas._libs.join, pandas._libs.window.aggregations, pandas._libs.window.indexers, pandas._libs.reshape, pandas._libs.groupby, pandas._libs.json, pandas._libs.parsers, pandas._libs.testing, scipy._lib._ccallback_c, scipy.sparse._sparsetools, _csparsetools, scipy.sparse._csparsetools, scipy.linalg._fblas, scipy.linalg._flapack, scipy.linalg.cython_lapack, scipy.linalg._cythonized_array_utils, scipy.linalg._solve_toeplitz, scipy.linalg._decomp_lu_cython, scipy.linalg._matfuncs_sqrtm_triu, scipy.linalg.cython_blas, scipy.linalg._matfuncs_expm, scipy.linalg._decomp_update, scipy.sparse.linalg._dsolve._superlu, scipy.sparse.linalg._eigen.arpack._arpack, scipy.sparse.linalg._propack._spropack, scipy.sparse.linalg._propack._dpropack, scipy.sparse.linalg._propack._cpropack, scipy.sparse.linalg._propack._zpropack, scipy.sparse.csgraph._tools, scipy.sparse.csgraph._shortest_path, scipy.sparse.csgraph._traversal, scipy.sparse.csgraph._min_spanning_tree, scipy.sparse.csgraph._flow, scipy.sparse.csgraph._matching, scipy.sparse.csgraph._reordering, scipy.spatial._ckdtree, scipy._lib.messagestream, scipy.spatial._qhull, scipy.spatial._voronoi, scipy.spatial._distance_wrap, scipy.spatial._hausdorff, scipy.special._ufuncs_cxx, scipy.special._cdflib, scipy.special._ufuncs, scipy.special._specfun, scipy.special._comb, scipy.special._ellip_harm_2, scipy.spatial.transform._rotation, scipy.ndimage._nd_image, _ni_label, scipy.ndimage._ni_label, scipy.optimize._minpack2, scipy.optimize._group_columns, scipy.optimize._trlib._trlib, scipy.optimize._lbfgsb, _moduleTNC, scipy.optimize._moduleTNC, scipy.optimize._cobyla, scipy.optimize._slsqp, scipy.optimize._minpack, scipy.optimize._lsq.givens_elimination, scipy.optimize._zeros, scipy.optimize._highs.cython.src._highs_wrapper, scipy.optimize._highs._highs_wrapper, scipy.optimize._highs.cython.src._highs_constants, scipy.optimize._highs._highs_constants, scipy.linalg._interpolative, scipy.optimize._bglu_dense, scipy.optimize._lsap, scipy.optimize._direct, scipy.integrate._odepack, scipy.integrate._quadpack, scipy.integrate._vode, scipy.integrate._dop, scipy.integrate._lsoda, scipy.special.cython_special, scipy.stats._stats, scipy.stats.beta_ufunc, scipy.stats._boost.beta_ufunc, scipy.stats.binom_ufunc, scipy.stats._boost.binom_ufunc, scipy.stats.nbinom_ufunc, scipy.stats._boost.nbinom_ufunc, scipy.stats.hypergeom_ufunc, scipy.stats._boost.hypergeom_ufunc, scipy.stats.ncf_ufunc, scipy.stats._boost.ncf_ufunc, scipy.stats.ncx2_ufunc, scipy.stats._boost.ncx2_ufunc, scipy.stats.nct_ufunc, scipy.stats._boost.nct_ufunc, scipy.stats.skewnorm_ufunc, scipy.stats._boost.skewnorm_ufunc, scipy.stats.invgauss_ufunc, scipy.stats._boost.invgauss_ufunc, scipy.interpolate._fitpack, scipy.interpolate.dfitpack, scipy.interpolate._bspl, scipy.interpolate._ppoly, scipy.interpolate.interpnd, scipy.interpolate._rbfinterp_pythran, scipy.interpolate._rgi_cython, scipy.stats._biasedurn, scipy.stats._levy_stable.levyst, scipy.stats._stats_pythran, scipy._lib._uarray._uarray, scipy.stats._ansari_swilk_statistics, scipy.stats._sobol, scipy.stats._qmc_cy, scipy.stats._mvn, scipy.stats._rcont.rcont, scipy.stats._unuran.unuran_wrapper, skbio.metadata._intersection, biom._filter, biom._transform, biom._subsample, skbio.stats.distance._cutils, skbio.stats.ordination._cutils, skbio.alignment._ssw_wrapper, skbio.diversity._phylogenetic, matplotlib._c_internal_utils, PIL._imaging, matplotlib._path, kiwisolver._cext, matplotlib._image (total: 221)
Segmentation fault
E: pybuild pybuild:389: test: plugin distutils failed with: exit code=139: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_skbio/build; python3.12 -m pytest --pyargs skbio
dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.12 returned exit code 13
make: *** [debian/rules:16: binary-arch] Error 25