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bug# | package | title | affects |
---|---|---|---|
1048966 | ncbi-igblast | ncbi-igblast: Fails to build source after successful build |
Install getbuildlog: sudo apt install devscripts
Download latest ncbi-igblast build logs: getbuildlog ncbi-igblast last
Download all ncbi-igblast build logs: getbuildlog ncbi-igblast
Rebuild against glibc 2.34
Rebuild for PAC/BTI support
Rebuild on DSAed buildd
/bin/rm -f libxncbi.a .xncbi.dep .libxncbi.a.stamp /bin/rm -f /<<PKGBUILDDIR>>/c++/GCC1220-Release/lib/libxncbi.a /<<PKGBUILDDIR>>/c++/GCC1220-Release/status/.xncbi.dep \ /<<PKGBUILDDIR>>/c++/GCC1220-Release/lib/libxncbi-static.a /<<PKGBUILDDIR>>/c++/GCC1220-Release/status/.xncbi-static.dep make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1220-Release/build/corelib' make[5]: *** [/<<PKGBUILDDIR>>/c++/src/build-system/Makefile.meta_l:328: all.nonusr] Error 2 make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1220-Release/build/corelib' make[4]: *** [/<<PKGBUILDDIR>>/c++/src/build-system/Makefile.meta_l:286: all_l.real] Error 2 make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1220-Release/build/corelib' make[3]: *** [/<<PKGBUILDDIR>>/c++/src/build-system/Makefile.meta_r:41: all_r.real] Error 5 make[3]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1220-Release/build' make[2]: *** [Makefile:24: all] Error 2 make[2]: Leaving directory '/<<PKGBUILDDIR>>/c++' make[1]: *** [debian/rules:21: override_dh_auto_build] Error 2 make[1]: Leaving directory '/<<PKGBUILDDIR>>' make: *** [debian/rules:4: binary-arch] Error 2
/bin/rm -f libxncbi.a .xncbi.dep .libxncbi.a.stamp /bin/rm -f /<<PKGBUILDDIR>>/c++/GCC1210-Release/lib/libxncbi.a /<<PKGBUILDDIR>>/c++/GCC1210-Release/status/.xncbi.dep \ /<<PKGBUILDDIR>>/c++/GCC1210-Release/lib/libxncbi-static.a /<<PKGBUILDDIR>>/c++/GCC1210-Release/status/.xncbi-static.dep make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1210-Release/build/corelib' make[5]: *** [/<<PKGBUILDDIR>>/c++/src/build-system/Makefile.meta_l:328: all.nonusr] Error 2 make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1210-Release/build/corelib' make[4]: *** [/<<PKGBUILDDIR>>/c++/src/build-system/Makefile.meta_l:286: all_l.real] Error 2 make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1210-Release/build/corelib' make[3]: *** [/<<PKGBUILDDIR>>/c++/src/build-system/Makefile.meta_r:41: all_r.real] Error 5 make[3]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1210-Release/build' make[2]: *** [Makefile:24: all] Error 2 make[2]: Leaving directory '/<<PKGBUILDDIR>>/c++' make[1]: *** [debian/rules:21: override_dh_auto_build] Error 2 make[1]: Leaving directory '/<<PKGBUILDDIR>>' make: *** [debian/rules:4: binary-arch] Error 2
/bin/rm -f libxncbi.a .xncbi.dep .libxncbi.a.stamp /bin/rm -f /<<PKGBUILDDIR>>/c++/GCC1220-Release/lib/libxncbi.a /<<PKGBUILDDIR>>/c++/GCC1220-Release/status/.xncbi.dep \ /<<PKGBUILDDIR>>/c++/GCC1220-Release/lib/libxncbi-static.a /<<PKGBUILDDIR>>/c++/GCC1220-Release/status/.xncbi-static.dep make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1220-Release/build/corelib' make[5]: *** [/<<PKGBUILDDIR>>/c++/src/build-system/Makefile.meta_l:328: all.nonusr] Error 2 make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1220-Release/build/corelib' make[4]: *** [/<<PKGBUILDDIR>>/c++/src/build-system/Makefile.meta_l:286: all_l.real] Error 2 make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1220-Release/build/corelib' make[3]: *** [/<<PKGBUILDDIR>>/c++/src/build-system/Makefile.meta_r:41: all_r.real] Error 5 make[3]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1220-Release/build' make[2]: *** [Makefile:24: all] Error 2 make[2]: Leaving directory '/<<PKGBUILDDIR>>/c++' make[1]: *** [debian/rules:21: override_dh_auto_build] Error 2 make[1]: Leaving directory '/<<PKGBUILDDIR>>' make: *** [debian/rules:4: binary-arch] Error 2
/bin/rm -f libxncbi.a .xncbi.dep .libxncbi.a.stamp /bin/rm -f /<<PKGBUILDDIR>>/c++/GCC1420-Release64/lib/libxncbi.a /<<PKGBUILDDIR>>/c++/GCC1420-Release64/status/.xncbi.dep \ /<<PKGBUILDDIR>>/c++/GCC1420-Release64/lib/libxncbi-static.a /<<PKGBUILDDIR>>/c++/GCC1420-Release64/status/.xncbi-static.dep make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1420-Release64/build/corelib' make[5]: *** [/<<PKGBUILDDIR>>/c++/src/build-system/Makefile.meta_l:328: all.nonusr] Error 2 make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1420-Release64/build/corelib' make[4]: *** [/<<PKGBUILDDIR>>/c++/src/build-system/Makefile.meta_l:286: all_l.real] Error 2 make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1420-Release64/build/corelib' make[3]: *** [/<<PKGBUILDDIR>>/c++/src/build-system/Makefile.meta_r:41: all_r.real] Error 5 make[3]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1420-Release64/build' make[2]: *** [Makefile:24: all] Error 2 make[2]: Leaving directory '/<<PKGBUILDDIR>>/c++' make[1]: *** [debian/rules:21: override_dh_auto_build] Error 2 make[1]: Leaving directory '/<<PKGBUILDDIR>>' make: *** [debian/rules:4: binary-arch] Error 2
/bin/rm -f libxncbi.a .xncbi.dep .libxncbi.a.stamp /bin/rm -f /<<PKGBUILDDIR>>/c++/GCC1210-Release/lib/libxncbi.a /<<PKGBUILDDIR>>/c++/GCC1210-Release/status/.xncbi.dep \ /<<PKGBUILDDIR>>/c++/GCC1210-Release/lib/libxncbi-static.a /<<PKGBUILDDIR>>/c++/GCC1210-Release/status/.xncbi-static.dep make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1210-Release/build/corelib' make[5]: *** [/<<PKGBUILDDIR>>/c++/src/build-system/Makefile.meta_l:328: all.nonusr] Error 2 make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1210-Release/build/corelib' make[4]: *** [/<<PKGBUILDDIR>>/c++/src/build-system/Makefile.meta_l:286: all_l.real] Error 2 make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1210-Release/build/corelib' make[3]: *** [/<<PKGBUILDDIR>>/c++/src/build-system/Makefile.meta_r:41: all_r.real] Error 5 make[3]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1210-Release/build' make[2]: *** [Makefile:24: all] Error 2 make[2]: Leaving directory '/<<PKGBUILDDIR>>/c++' make[1]: *** [debian/rules:21: override_dh_auto_build] Error 2 make[1]: Leaving directory '/<<PKGBUILDDIR>>' make: *** [debian/rules:4: binary-arch] Error 2
/bin/rm -f libxxconnect.a .xxconnect.dep .libxxconnect.a.stamp /bin/rm -f /<<PKGBUILDDIR>>/c++/GCC1320-Release64/lib/libxxconnect.a /<<PKGBUILDDIR>>/c++/GCC1320-Release64/status/.xxconnect.dep \ /<<PKGBUILDDIR>>/c++/GCC1320-Release64/lib/libxxconnect-static.a /<<PKGBUILDDIR>>/c++/GCC1320-Release64/status/.xxconnect-static.dep make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1320-Release64/build/connect' make[5]: *** [/<<PKGBUILDDIR>>/c++/src/build-system/Makefile.meta_l:328: all.nonusr] Error 2 make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1320-Release64/build/connect' make[4]: *** [/<<PKGBUILDDIR>>/c++/src/build-system/Makefile.meta_l:286: all_l.real] Error 2 make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1320-Release64/build/connect' make[3]: *** [/<<PKGBUILDDIR>>/c++/src/build-system/Makefile.meta_r:41: all_r.real] Error 5 make[3]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1320-Release64/build' make[2]: *** [Makefile:24: all] Error 2 make[2]: Leaving directory '/<<PKGBUILDDIR>>/c++' make[1]: *** [debian/rules:21: override_dh_auto_build] Error 2 make[1]: Leaving directory '/<<PKGBUILDDIR>>' make: *** [debian/rules:4: binary-arch] Error 2
/bin/rm -f libxncbi.a .xncbi.dep .libxncbi.a.stamp /bin/rm -f /<<PKGBUILDDIR>>/c++/GCC1310-Release/lib/libxncbi.a /<<PKGBUILDDIR>>/c++/GCC1310-Release/status/.xncbi.dep \ /<<PKGBUILDDIR>>/c++/GCC1310-Release/lib/libxncbi-static.a /<<PKGBUILDDIR>>/c++/GCC1310-Release/status/.xncbi-static.dep make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1310-Release/build/corelib' make[5]: *** [/<<PKGBUILDDIR>>/c++/src/build-system/Makefile.meta_l:328: all.nonusr] Error 2 make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1310-Release/build/corelib' make[4]: *** [/<<PKGBUILDDIR>>/c++/src/build-system/Makefile.meta_l:286: all_l.real] Error 2 make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1310-Release/build/corelib' make[3]: *** [/<<PKGBUILDDIR>>/c++/src/build-system/Makefile.meta_r:41: all_r.real] Error 5 make[3]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1310-Release/build' make[2]: *** [Makefile:24: all] Error 2 make[2]: Leaving directory '/<<PKGBUILDDIR>>/c++' make[1]: *** [debian/rules:21: override_dh_auto_build] Error 2 make[1]: Leaving directory '/<<PKGBUILDDIR>>' make: *** [debian/rules:4: binary-arch] Error 2
/bin/rm -f libxncbi.a .xncbi.dep .libxncbi.a.stamp /bin/rm -f /<<PKGBUILDDIR>>/c++/GCC1420-Release/lib/libxncbi.a /<<PKGBUILDDIR>>/c++/GCC1420-Release/status/.xncbi.dep \ /<<PKGBUILDDIR>>/c++/GCC1420-Release/lib/libxncbi-static.a /<<PKGBUILDDIR>>/c++/GCC1420-Release/status/.xncbi-static.dep make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1420-Release/build/corelib' make[5]: *** [/<<PKGBUILDDIR>>/c++/src/build-system/Makefile.meta_l:328: all.nonusr] Error 2 make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1420-Release/build/corelib' make[4]: *** [/<<PKGBUILDDIR>>/c++/src/build-system/Makefile.meta_l:286: all_l.real] Error 2 make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1420-Release/build/corelib' make[3]: *** [/<<PKGBUILDDIR>>/c++/src/build-system/Makefile.meta_r:41: all_r.real] Error 5 make[3]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1420-Release/build' make[2]: *** [Makefile:24: all] Error 2 make[2]: Leaving directory '/<<PKGBUILDDIR>>/c++' make[1]: *** [debian/rules:21: override_dh_auto_build] Error 2 make[1]: Leaving directory '/<<PKGBUILDDIR>>' make: *** [debian/rules:4: binary-arch] Error 2
/bin/rm -f libxncbi.a .xncbi.dep .libxncbi.a.stamp /bin/rm -f /<<PKGBUILDDIR>>/c++/GCC1320-Release/lib/libxncbi.a /<<PKGBUILDDIR>>/c++/GCC1320-Release/status/.xncbi.dep \ /<<PKGBUILDDIR>>/c++/GCC1320-Release/lib/libxncbi-static.a /<<PKGBUILDDIR>>/c++/GCC1320-Release/status/.xncbi-static.dep make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1320-Release/build/corelib' make[5]: *** [/<<PKGBUILDDIR>>/c++/src/build-system/Makefile.meta_l:328: all.nonusr] Error 2 make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1320-Release/build/corelib' make[4]: *** [/<<PKGBUILDDIR>>/c++/src/build-system/Makefile.meta_l:286: all_l.real] Error 2 make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1320-Release/build/corelib' make[3]: *** [/<<PKGBUILDDIR>>/c++/src/build-system/Makefile.meta_r:41: all_r.real] Error 5 make[3]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1320-Release/build' make[2]: *** [Makefile:24: all] Error 2 make[2]: Leaving directory '/<<PKGBUILDDIR>>/c++' make[1]: *** [debian/rules:21: override_dh_auto_build] Error 2 make[1]: Leaving directory '/<<PKGBUILDDIR>>' make: *** [debian/rules:4: binary-arch] Error 2
DIS -- [objtools/blast/seqdb_reader/test] scan_blastdb_mt DIS -- [objtools/blast/seqdb_reader/test] scan_blastdb_st DIS -- [objtools/blast/seqdb_reader/test] get_blastdb_metadata Succeeded : 4 Timeout : 0 Failed : 2 Absent : 4 make[2]: *** [/<<PKGBUILDDIR>>/c++/src/build-system/Makefile.meta_r:46: check_r.real] Error 7 make[2]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1420-Release64/build' make[1]: *** [Makefile:33: check] Error 2 make[1]: Leaving directory '/<<PKGBUILDDIR>>/c++' dh_auto_test: error: cd c\+\+ && make -j16 check "TESTSUITEFLAGS=-j16 --verbose" VERBOSE=1 returned exit code 2 make: *** [debian/rules:4: binary-arch] Error 25
> /<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket_cxx.cpp:405:14: error: ‘PATH_MAX’ was not declared in this scope