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Buildd status for ncbi-igblast (sid)

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ArchitectureVersionStatusForBuilddStateSectionLogsActions
all is not present in the architecture list set by the maintainer
Buildd exposure stats amd64 1.19.0-1+b1Installed830d 2h 24mx86-conova-01miscold | all (1)giveback
Buildd exposure stats arm64 1.19.0-1+b2Installed17d 11h 10marm-conova-03miscold | all (1)giveback
Buildd exposure stats armel  1.19.0-1Build-Attempted529d 15h 1marm-ubc-04uncompiledmiscold | all (2)giveback
Buildd exposure stats armhf  1.19.0-1Build-Attempted838d 21h 42mhoibyuncompiledmiscold | all (1)giveback
Buildd exposure stats i386  1.19.0-1Build-Attempted529d 15h 49mx86-ubc-02uncompiledmiscold | all (2)giveback
Buildd exposure stats mips64el 1.19.0-1+b1Installed829d 1h 14meberlinmiscold | all (1)giveback
Buildd exposure stats ppc64el 1.19.0-1+b1Installed830d 2h 24mppc64el-unicamp-01miscold | all (1)giveback
Buildd exposure stats riscv64 1.19.0-1+b2Installed274d 23h 44mrv-manda-04miscold | all (1)giveback
Buildd exposure stats s390x 1.19.0-1+b1Installed830d 4h 55mzandonaimiscold | all (1)giveback
Buildd exposure stats alpha  1.19.0-1Build-Attempted90d 53malpha-sc-02uncompiledmiscold | all (5)giveback
Buildd exposure stats hppa  1.19.0-1Build-Attempted838d 21h 9mpacific2uncompiledmiscold | all (1)giveback
Buildd exposure stats hurd-amd64  1.19.0-1Failed112d 23h 28mboralusuncompiledmiscold | all (1)giveback
Buildd exposure stats hurd-i386  1.19.0-1Failed833d 12h 29mironforgeuncompiledmiscold | all (1)giveback
Buildd exposure stats loong64 1.19.0-1Installed450d 21h 59mloong64-osuosl-02miscold | all (1)giveback
Buildd exposure stats m68k  1.19.0-1Build-Attempted480d 17h 36mm68k-osuosl-01uncompiledmiscold | all (10)giveback
Buildd exposure stats powerpc  1.19.0-1Build-Attempted22d 18h 59mdebian-project-be-2uncompiledmiscold | all (6)giveback
Buildd exposure stats ppc64 1.19.0-1+b1Installed830d 3h 17mkapitsa2miscold | all (1)giveback
Buildd exposure stats sh4  1.19.0-1Build-Attempted229d 19h 35msh4-osuosl-03uncompiledmiscold | all (8)giveback
Buildd exposure stats sparc64  1.19.0-1Build-Attempted46d 8h 10msompekuncompiledmiscold | all (23)giveback
Buildd exposure stats x32 1.19.0-1+b1Installed830d 1h 47mx32-do-01miscold | all (1)giveback

FTBFS bugs affecting ncbi-igblast in unstable:

bug#packagetitleaffects
1048966ncbi-igblastncbi-igblast: Fails to build source after successful build

Install getbuildlog: sudo apt install devscripts
Download latest ncbi-igblast build logs: getbuildlog ncbi-igblast last
Download all ncbi-igblast build logs: getbuildlog ncbi-igblast

BinNMU changelog for ncbi-igblast on amd64, mips64el, ppc64el, s390x, ppc64 and x32:

Rebuild against glibc 2.34

BinNMU changelog for ncbi-igblast on arm64:

Rebuild for PAC/BTI support

BinNMU changelog for ncbi-igblast on riscv64:

Rebuild on DSAed buildd

Tail of log for ncbi-igblast on armel:

/bin/rm -f libxncbi.a .xncbi.dep .libxncbi.a.stamp
/bin/rm -f /<<PKGBUILDDIR>>/c++/GCC1220-Release/lib/libxncbi.a /<<PKGBUILDDIR>>/c++/GCC1220-Release/status/.xncbi.dep \
    /<<PKGBUILDDIR>>/c++/GCC1220-Release/lib/libxncbi-static.a /<<PKGBUILDDIR>>/c++/GCC1220-Release/status/.xncbi-static.dep
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1220-Release/build/corelib'
make[5]: *** [/<<PKGBUILDDIR>>/c++/src/build-system/Makefile.meta_l:328: all.nonusr] Error 2
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1220-Release/build/corelib'
make[4]: *** [/<<PKGBUILDDIR>>/c++/src/build-system/Makefile.meta_l:286: all_l.real] Error 2
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1220-Release/build/corelib'
make[3]: *** [/<<PKGBUILDDIR>>/c++/src/build-system/Makefile.meta_r:41: all_r.real] Error 5
make[3]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1220-Release/build'
make[2]: *** [Makefile:24: all] Error 2
make[2]: Leaving directory '/<<PKGBUILDDIR>>/c++'
make[1]: *** [debian/rules:21: override_dh_auto_build] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:4: binary-arch] Error 2

Tail of log for ncbi-igblast on armhf:

/bin/rm -f libxncbi.a .xncbi.dep .libxncbi.a.stamp
/bin/rm -f /<<PKGBUILDDIR>>/c++/GCC1210-Release/lib/libxncbi.a /<<PKGBUILDDIR>>/c++/GCC1210-Release/status/.xncbi.dep \
    /<<PKGBUILDDIR>>/c++/GCC1210-Release/lib/libxncbi-static.a /<<PKGBUILDDIR>>/c++/GCC1210-Release/status/.xncbi-static.dep
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1210-Release/build/corelib'
make[5]: *** [/<<PKGBUILDDIR>>/c++/src/build-system/Makefile.meta_l:328: all.nonusr] Error 2
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1210-Release/build/corelib'
make[4]: *** [/<<PKGBUILDDIR>>/c++/src/build-system/Makefile.meta_l:286: all_l.real] Error 2
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1210-Release/build/corelib'
make[3]: *** [/<<PKGBUILDDIR>>/c++/src/build-system/Makefile.meta_r:41: all_r.real] Error 5
make[3]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1210-Release/build'
make[2]: *** [Makefile:24: all] Error 2
make[2]: Leaving directory '/<<PKGBUILDDIR>>/c++'
make[1]: *** [debian/rules:21: override_dh_auto_build] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:4: binary-arch] Error 2

Tail of log for ncbi-igblast on i386:

/bin/rm -f libxncbi.a .xncbi.dep .libxncbi.a.stamp
/bin/rm -f /<<PKGBUILDDIR>>/c++/GCC1220-Release/lib/libxncbi.a /<<PKGBUILDDIR>>/c++/GCC1220-Release/status/.xncbi.dep \
    /<<PKGBUILDDIR>>/c++/GCC1220-Release/lib/libxncbi-static.a /<<PKGBUILDDIR>>/c++/GCC1220-Release/status/.xncbi-static.dep
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1220-Release/build/corelib'
make[5]: *** [/<<PKGBUILDDIR>>/c++/src/build-system/Makefile.meta_l:328: all.nonusr] Error 2
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1220-Release/build/corelib'
make[4]: *** [/<<PKGBUILDDIR>>/c++/src/build-system/Makefile.meta_l:286: all_l.real] Error 2
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1220-Release/build/corelib'
make[3]: *** [/<<PKGBUILDDIR>>/c++/src/build-system/Makefile.meta_r:41: all_r.real] Error 5
make[3]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1220-Release/build'
make[2]: *** [Makefile:24: all] Error 2
make[2]: Leaving directory '/<<PKGBUILDDIR>>/c++'
make[1]: *** [debian/rules:21: override_dh_auto_build] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:4: binary-arch] Error 2

Tail of log for ncbi-igblast on alpha:

/bin/rm -f libxncbi.a .xncbi.dep .libxncbi.a.stamp
/bin/rm -f /<<PKGBUILDDIR>>/c++/GCC1420-Release64/lib/libxncbi.a /<<PKGBUILDDIR>>/c++/GCC1420-Release64/status/.xncbi.dep \
    /<<PKGBUILDDIR>>/c++/GCC1420-Release64/lib/libxncbi-static.a /<<PKGBUILDDIR>>/c++/GCC1420-Release64/status/.xncbi-static.dep
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1420-Release64/build/corelib'
make[5]: *** [/<<PKGBUILDDIR>>/c++/src/build-system/Makefile.meta_l:328: all.nonusr] Error 2
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1420-Release64/build/corelib'
make[4]: *** [/<<PKGBUILDDIR>>/c++/src/build-system/Makefile.meta_l:286: all_l.real] Error 2
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1420-Release64/build/corelib'
make[3]: *** [/<<PKGBUILDDIR>>/c++/src/build-system/Makefile.meta_r:41: all_r.real] Error 5
make[3]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1420-Release64/build'
make[2]: *** [Makefile:24: all] Error 2
make[2]: Leaving directory '/<<PKGBUILDDIR>>/c++'
make[1]: *** [debian/rules:21: override_dh_auto_build] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:4: binary-arch] Error 2

Tail of log for ncbi-igblast on hppa:

/bin/rm -f libxncbi.a .xncbi.dep .libxncbi.a.stamp
/bin/rm -f /<<PKGBUILDDIR>>/c++/GCC1210-Release/lib/libxncbi.a /<<PKGBUILDDIR>>/c++/GCC1210-Release/status/.xncbi.dep \
    /<<PKGBUILDDIR>>/c++/GCC1210-Release/lib/libxncbi-static.a /<<PKGBUILDDIR>>/c++/GCC1210-Release/status/.xncbi-static.dep
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1210-Release/build/corelib'
make[5]: *** [/<<PKGBUILDDIR>>/c++/src/build-system/Makefile.meta_l:328: all.nonusr] Error 2
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1210-Release/build/corelib'
make[4]: *** [/<<PKGBUILDDIR>>/c++/src/build-system/Makefile.meta_l:286: all_l.real] Error 2
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1210-Release/build/corelib'
make[3]: *** [/<<PKGBUILDDIR>>/c++/src/build-system/Makefile.meta_r:41: all_r.real] Error 5
make[3]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1210-Release/build'
make[2]: *** [Makefile:24: all] Error 2
make[2]: Leaving directory '/<<PKGBUILDDIR>>/c++'
make[1]: *** [debian/rules:21: override_dh_auto_build] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:4: binary-arch] Error 2

Tail of log for ncbi-igblast on hurd-amd64 (other failed builds: hurd-i386):

/bin/rm -f libxxconnect.a .xxconnect.dep .libxxconnect.a.stamp
/bin/rm -f /<<PKGBUILDDIR>>/c++/GCC1320-Release64/lib/libxxconnect.a /<<PKGBUILDDIR>>/c++/GCC1320-Release64/status/.xxconnect.dep \
    /<<PKGBUILDDIR>>/c++/GCC1320-Release64/lib/libxxconnect-static.a /<<PKGBUILDDIR>>/c++/GCC1320-Release64/status/.xxconnect-static.dep
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1320-Release64/build/connect'
make[5]: *** [/<<PKGBUILDDIR>>/c++/src/build-system/Makefile.meta_l:328: all.nonusr] Error 2
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1320-Release64/build/connect'
make[4]: *** [/<<PKGBUILDDIR>>/c++/src/build-system/Makefile.meta_l:286: all_l.real] Error 2
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1320-Release64/build/connect'
make[3]: *** [/<<PKGBUILDDIR>>/c++/src/build-system/Makefile.meta_r:41: all_r.real] Error 5
make[3]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1320-Release64/build'
make[2]: *** [Makefile:24: all] Error 2
make[2]: Leaving directory '/<<PKGBUILDDIR>>/c++'
make[1]: *** [debian/rules:21: override_dh_auto_build] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:4: binary-arch] Error 2

Tail of log for ncbi-igblast on m68k:

/bin/rm -f libxncbi.a .xncbi.dep .libxncbi.a.stamp
/bin/rm -f /<<PKGBUILDDIR>>/c++/GCC1310-Release/lib/libxncbi.a /<<PKGBUILDDIR>>/c++/GCC1310-Release/status/.xncbi.dep \
    /<<PKGBUILDDIR>>/c++/GCC1310-Release/lib/libxncbi-static.a /<<PKGBUILDDIR>>/c++/GCC1310-Release/status/.xncbi-static.dep
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1310-Release/build/corelib'
make[5]: *** [/<<PKGBUILDDIR>>/c++/src/build-system/Makefile.meta_l:328: all.nonusr] Error 2
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1310-Release/build/corelib'
make[4]: *** [/<<PKGBUILDDIR>>/c++/src/build-system/Makefile.meta_l:286: all_l.real] Error 2
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1310-Release/build/corelib'
make[3]: *** [/<<PKGBUILDDIR>>/c++/src/build-system/Makefile.meta_r:41: all_r.real] Error 5
make[3]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1310-Release/build'
make[2]: *** [Makefile:24: all] Error 2
make[2]: Leaving directory '/<<PKGBUILDDIR>>/c++'
make[1]: *** [debian/rules:21: override_dh_auto_build] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:4: binary-arch] Error 2

Tail of log for ncbi-igblast on powerpc:

/bin/rm -f libxncbi.a .xncbi.dep .libxncbi.a.stamp
/bin/rm -f /<<PKGBUILDDIR>>/c++/GCC1420-Release/lib/libxncbi.a /<<PKGBUILDDIR>>/c++/GCC1420-Release/status/.xncbi.dep \
    /<<PKGBUILDDIR>>/c++/GCC1420-Release/lib/libxncbi-static.a /<<PKGBUILDDIR>>/c++/GCC1420-Release/status/.xncbi-static.dep
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1420-Release/build/corelib'
make[5]: *** [/<<PKGBUILDDIR>>/c++/src/build-system/Makefile.meta_l:328: all.nonusr] Error 2
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1420-Release/build/corelib'
make[4]: *** [/<<PKGBUILDDIR>>/c++/src/build-system/Makefile.meta_l:286: all_l.real] Error 2
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1420-Release/build/corelib'
make[3]: *** [/<<PKGBUILDDIR>>/c++/src/build-system/Makefile.meta_r:41: all_r.real] Error 5
make[3]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1420-Release/build'
make[2]: *** [Makefile:24: all] Error 2
make[2]: Leaving directory '/<<PKGBUILDDIR>>/c++'
make[1]: *** [debian/rules:21: override_dh_auto_build] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:4: binary-arch] Error 2

Tail of log for ncbi-igblast on sh4:

/bin/rm -f libxncbi.a .xncbi.dep .libxncbi.a.stamp
/bin/rm -f /<<PKGBUILDDIR>>/c++/GCC1320-Release/lib/libxncbi.a /<<PKGBUILDDIR>>/c++/GCC1320-Release/status/.xncbi.dep \
    /<<PKGBUILDDIR>>/c++/GCC1320-Release/lib/libxncbi-static.a /<<PKGBUILDDIR>>/c++/GCC1320-Release/status/.xncbi-static.dep
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1320-Release/build/corelib'
make[5]: *** [/<<PKGBUILDDIR>>/c++/src/build-system/Makefile.meta_l:328: all.nonusr] Error 2
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1320-Release/build/corelib'
make[4]: *** [/<<PKGBUILDDIR>>/c++/src/build-system/Makefile.meta_l:286: all_l.real] Error 2
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1320-Release/build/corelib'
make[3]: *** [/<<PKGBUILDDIR>>/c++/src/build-system/Makefile.meta_r:41: all_r.real] Error 5
make[3]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1320-Release/build'
make[2]: *** [Makefile:24: all] Error 2
make[2]: Leaving directory '/<<PKGBUILDDIR>>/c++'
make[1]: *** [debian/rules:21: override_dh_auto_build] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:4: binary-arch] Error 2

Tail of log for ncbi-igblast on sparc64:

DIS --  [objtools/blast/seqdb_reader/test] scan_blastdb_mt
DIS --  [objtools/blast/seqdb_reader/test] scan_blastdb_st
DIS --  [objtools/blast/seqdb_reader/test] get_blastdb_metadata

Succeeded : 4
Timeout   : 0
Failed    : 2
Absent    : 4

make[2]: *** [/<<PKGBUILDDIR>>/c++/src/build-system/Makefile.meta_r:46: check_r.real] Error 7
make[2]: Leaving directory '/<<PKGBUILDDIR>>/c++/GCC1420-Release64/build'
make[1]: *** [Makefile:33: check] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>/c++'
dh_auto_test: error: cd c\+\+ && make -j16 check "TESTSUITEFLAGS=-j16 --verbose" VERBOSE=1 returned exit code 2
make: *** [debian/rules:4: binary-arch] Error 25

Failing reason for ncbi-igblast on hurd-amd64 and hurd-i386:

> /<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket_cxx.cpp:405:14: error: ‘PATH_MAX’ was not declared in this scope