Debian Bug report logs - #756509
apt: "apt upgrade" suggests to remove packages not installed with apt-get autoremove

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Message #5 received at [email protected] (full text, mbox, reply):

From: Ansgar Burchardt <[email protected]>

To: Debian Bug Tracking System <[email protected]>

Subject: apt: "apt upgrade" suggests to remove packages not installed with apt-get autoremove

Date: Wed, 30 Jul 2014 15:12:33 +0200

Package: apt
Version: 1.0.6
Severity: minor

Hi,

running "apt upgrade" suggests to remove libcdt5, libcgraph6, and
libgvpr2. At the same time it also wants to install them, even though
graphviz is held back:

+---
| ~ # apt upgrade                              
| Reading package lists... Done
| Building dependency tree       
| Reading state information... Done
| Calculating upgrade... The following packages were automatically installed and are no longer required:
|   libcdt5 libcgraph6 libgvpr2
| Use 'apt-get autoremove' to remove them.
| Done
| The following NEW packages will be installed:
|   libcdt5 libcgraph6 libgvpr2
| The following packages have been kept back:
|   graphviz
| 0 upgraded, 3 newly installed, 0 to remove and 1 not upgraded.
| Need to get 0 B/359 kB of archives.
| After this operation, 911 kB of additional disk space will be used.
| Do you want to continue? [Y/n] n
+---

Just to be sure, the packages are currently not installed:

+---
| ~ # dpkg -l libcdt5 libcgraph6 libgvpr2      
| dpkg-query: no packages found matching libcdt5
| dpkg-query: no packages found matching libcgraph6
| dpkg-query: no packages found matching libgvpr2
+---

apt-get dist-upgrade will upgrade graphviz:

+---
| ~ # apt-get dist-upgrade
| Reading package lists... Done
| Building dependency tree       
| Reading state information... Done
| Calculating upgrade... The following packages were automatically installed and are no longer required:
|   libcdt4 libcgraph5 libgraph4 libgvpr1
| Use 'apt-get autoremove' to remove them.
| Done
| The following packages will be REMOVED:
|   libgvc5
| The following NEW packages will be installed:
|   libcdt5 libcgraph6 libgvc6 libgvpr2
| The following packages will be upgraded:
|   graphviz
| 1 upgraded, 4 newly installed, 1 to remove and 0 not upgraded.
| Need to get 1415 kB/1774 kB of archives.
| After this operation, 10.4 MB of additional disk space will be used.
| Do you want to continue? [Y/n]
| [...]
| Unpacking graphviz (2.38.0-4) over (2.26.3-17.1) ...
+---

Afterwards apt-get autoremove removed libcdt4, libcgraph5, libgraph4,
libgvpr1. "apt upgrade" then stopped its strange behavior.

Ansgar

-- Package-specific info:

-- apt-config dump --

APT "";
APT::Architecture "amd64";
APT::Build-Essential "";
APT::Build-Essential:: "build-essential";
APT::Install-Recommends "0";
APT::Install-Suggests "0";
APT::Authentication "";
APT::Authentication::TrustCDROM "true";
APT::NeverAutoRemove "";
APT::NeverAutoRemove:: "^firmware-linux.*";
APT::NeverAutoRemove:: "^linux-firmware$";
APT::NeverAutoRemove:: "^linux-image-3\.13-1-amd64$";
APT::NeverAutoRemove:: "^linux-image-3\.14-1-amd64$";
APT::NeverAutoRemove:: "^linux-headers-3\.13-1-amd64$";
APT::NeverAutoRemove:: "^linux-headers-3\.14-1-amd64$";
APT::NeverAutoRemove:: "^linux-image-extra-3\.13-1-amd64$";
APT::NeverAutoRemove:: "^linux-image-extra-3\.14-1-amd64$";
APT::NeverAutoRemove:: "^linux-signed-image-3\.13-1-amd64$";
APT::NeverAutoRemove:: "^linux-signed-image-3\.14-1-amd64$";
APT::NeverAutoRemove:: "^kfreebsd-image-3\.13-1-amd64$";
APT::NeverAutoRemove:: "^kfreebsd-image-3\.14-1-amd64$";
APT::NeverAutoRemove:: "^kfreebsd-headers-3\.13-1-amd64$";
APT::NeverAutoRemove:: "^kfreebsd-headers-3\.14-1-amd64$";
APT::NeverAutoRemove:: "^gnumach-image-3\.13-1-amd64$";
APT::NeverAutoRemove:: "^gnumach-image-3\.14-1-amd64$";
APT::NeverAutoRemove:: "^.*-modules-3\.13-1-amd64$";
APT::NeverAutoRemove:: "^.*-modules-3\.14-1-amd64$";
APT::NeverAutoRemove:: "^.*-kernel-3\.13-1-amd64$";
APT::NeverAutoRemove:: "^.*-kernel-3\.14-1-amd64$";
APT::NeverAutoRemove:: "^linux-backports-modules-.*-3\.13-1-amd64$";
APT::NeverAutoRemove:: "^linux-backports-modules-.*-3\.14-1-amd64$";
APT::NeverAutoRemove:: "^linux-tools-3\.13-1-amd64$";
APT::NeverAutoRemove:: "^linux-tools-3\.14-1-amd64$";
APT::VersionedKernelPackages "";
APT::VersionedKernelPackages:: "linux-image";
APT::VersionedKernelPackages:: "linux-headers";
APT::VersionedKernelPackages:: "linux-image-extra";
APT::VersionedKernelPackages:: "linux-signed-image";
APT::VersionedKernelPackages:: "kfreebsd-image";
APT::VersionedKernelPackages:: "kfreebsd-headers";
APT::VersionedKernelPackages:: "gnumach-image";
APT::VersionedKernelPackages:: ".*-modules";
APT::VersionedKernelPackages:: ".*-kernel";
APT::VersionedKernelPackages:: "linux-backports-modules-.*";
APT::VersionedKernelPackages:: "linux-tools";
APT::Never-MarkAuto-Sections "";
APT::Never-MarkAuto-Sections:: "metapackages";
APT::Never-MarkAuto-Sections:: "restricted/metapackages";
APT::Never-MarkAuto-Sections:: "universe/metapackages";
APT::Never-MarkAuto-Sections:: "multiverse/metapackages";
APT::Never-MarkAuto-Sections:: "oldlibs";
APT::Never-MarkAuto-Sections:: "restricted/oldlibs";
APT::Never-MarkAuto-Sections:: "universe/oldlibs";
APT::Never-MarkAuto-Sections:: "multiverse/oldlibs";
APT::Update "";
APT::Update::Post-Invoke-Success "";
APT::Update::Post-Invoke-Success:: "/usr/bin/test -e /usr/share/dbus-1/system-services/org.freedesktop.PackageKit.service && /usr/bin/test -S /var/run/dbus/system_bus_socket && /usr/bin/gdbus call --system --dest org.freedesktop.PackageKit --object-path /org/freedesktop/PackageKit --timeout 4 --method org.freedesktop.PackageKit.StateHasChanged cache-update > /dev/null; /bin/echo > /dev/null";
APT::Periodic "";
APT::Periodic::Enable "1";
APT::Periodic::Update-Package-Lists "1";
APT::Architectures "";
APT::Architectures:: "amd64";
APT::Compressor "";
APT::Compressor::. "";
APT::Compressor::.::Name ".";
APT::Compressor::.::Extension "";
APT::Compressor::.::Binary "";
APT::Compressor::.::Cost "1";
APT::Compressor::gzip "";
APT::Compressor::gzip::Name "gzip";
APT::Compressor::gzip::Extension ".gz";
APT::Compressor::gzip::Binary "gzip";
APT::Compressor::gzip::Cost "2";
APT::Compressor::gzip::CompressArg "";
APT::Compressor::gzip::CompressArg:: "-9n";
APT::Compressor::gzip::UncompressArg "";
APT::Compressor::gzip::UncompressArg:: "-d";
APT::Compressor::bzip2 "";
APT::Compressor::bzip2::Name "bzip2";
APT::Compressor::bzip2::Extension ".bz2";
APT::Compressor::bzip2::Binary "bzip2";
APT::Compressor::bzip2::Cost "3";
APT::Compressor::bzip2::CompressArg "";
APT::Compressor::bzip2::CompressArg:: "-9";
APT::Compressor::bzip2::UncompressArg "";
APT::Compressor::bzip2::UncompressArg:: "-d";
APT::Compressor::xz "";
APT::Compressor::xz::Name "xz";
APT::Compressor::xz::Extension ".xz";
APT::Compressor::xz::Binary "xz";
APT::Compressor::xz::Cost "4";
APT::Compressor::xz::CompressArg "";
APT::Compressor::xz::CompressArg:: "-6";
APT::Compressor::xz::UncompressArg "";
APT::Compressor::xz::UncompressArg:: "-d";
APT::Compressor::lzma "";
APT::Compressor::lzma::Name "lzma";
APT::Compressor::lzma::Extension ".lzma";
APT::Compressor::lzma::Binary "xz";
APT::Compressor::lzma::Cost "5";
APT::Compressor::lzma::CompressArg "";
APT::Compressor::lzma::CompressArg:: "--format=lzma";
APT::Compressor::lzma::CompressArg:: "-9";
APT::Compressor::lzma::UncompressArg "";
APT::Compressor::lzma::UncompressArg:: "--format=lzma";
APT::Compressor::lzma::UncompressArg:: "-d";
Dir "/";
Dir::State "var/lib/apt/";
Dir::State::lists "lists/";
Dir::State::cdroms "cdroms.list";
Dir::State::mirrors "mirrors/";
Dir::State::extended_states "extended_states";
Dir::State::status "/var/lib/dpkg/status";
Dir::Cache "var/cache/apt/";
Dir::Cache::archives "archives/";
Dir::Cache::srcpkgcache "srcpkgcache.bin";
Dir::Cache::pkgcache "pkgcache.bin";
Dir::Etc "etc/apt/";
Dir::Etc::sourcelist "sources.list";
Dir::Etc::sourceparts "sources.list.d";
Dir::Etc::vendorlist "vendors.list";
Dir::Etc::vendorparts "vendors.list.d";
Dir::Etc::main "apt.conf";
Dir::Etc::netrc "auth.conf";
Dir::Etc::parts "apt.conf.d";
Dir::Etc::preferences "preferences";
Dir::Etc::preferencesparts "preferences.d";
Dir::Etc::trusted "trusted.gpg";
Dir::Etc::trustedparts "trusted.gpg.d";
Dir::Bin "";
Dir::Bin::methods "/usr/lib/apt/methods";
Dir::Bin::solvers "";
Dir::Bin::solvers:: "/usr/lib/apt/solvers";
Dir::Bin::dpkg "/usr/bin/dpkg";
Dir::Bin::bzip2 "/bin/bzip2";
Dir::Bin::xz "/usr/bin/xz";
Dir::Bin::lzma "/usr/bin/xz";
Dir::Media "";
Dir::Media::MountPath "/media/apt";
Dir::Log "var/log/apt";
Dir::Log::Terminal "term.log";
Dir::Log::History "history.log";
Dir::Ignore-Files-Silently "";
Dir::Ignore-Files-Silently:: "~$";
Dir::Ignore-Files-Silently:: "\.disabled$";
Dir::Ignore-Files-Silently:: "\.bak$";
Dir::Ignore-Files-Silently:: "\.dpkg-[a-z]+$";
Dir::Ignore-Files-Silently:: "\.save$";
Dir::Ignore-Files-Silently:: "\.orig$";
Dir::Ignore-Files-Silently:: "\.distUpgrade$";
Acquire "";
Acquire::cdrom "";
Acquire::cdrom::mount "/media/cdrom/";
Acquire::PDiffs "0";
Acquire::Languages "";
Acquire::Languages:: "en";
Acquire::Languages:: "none";
DPkg "";
DPkg::Post-Invoke "";
DPkg::Post-Invoke:: "/usr/bin/test -e /usr/share/dbus-1/system-services/org.freedesktop.PackageKit.service && /usr/bin/test -S /var/run/dbus/system_bus_socket && /usr/bin/gdbus call --system --dest org.freedesktop.PackageKit --object-path /org/freedesktop/PackageKit --timeout 4 --method org.freedesktop.PackageKit.StateHasChanged cache-update > /dev/null; /bin/echo > /dev/null";
DPkg::Post-Invoke:: "[ ! -e /usr/bin/how-can-i-help ] || /usr/bin/how-can-i-help";
DPkg::Pre-Install-Pkgs "";
DPkg::Pre-Install-Pkgs:: "/usr/sbin/dpkg-preconfigure --apt || true";
CommandLine "";
CommandLine::AsString "apt-config dump";

-- /etc/apt/preferences --

Package: *
Pin: release unstable
Pin-Priority: 100

Package: debian-keyring lintian debian-policy
Pin: release unstable
Pin-Priority: 500

Package: chromium chromium-inspector
Pin: release unstable
Pin-Priority: 500

Package: iceweasel xulrunner-29 libmozjs29d
Pin: release experimental
Pin-Priority: 500

Package: iceweasel xulrunner-29 libmozjs29d
Pin: release unstable
Pin-Priority: 500

Package: libdune-pdelab-dev libdune-pdelab-2.0dev libdune-typetree-dev libdune-typetree-2.3dev
Pin: release experimental
Pin-Priority: 500


-- /etc/apt/sources.list --

# deb http://ftp.halifax.rwth-aachen.de/debian/ jessie main

deb http://ftp.halifax.rwth-aachen.de/debian/ jessie main contrib non-free
deb-src http://ftp.halifax.rwth-aachen.de/debian/ jessie main

deb http://ftp.halifax.rwth-aachen.de/debian/ unstable main contrib non-free
deb-src http://ftp.halifax.rwth-aachen.de/debian/ unstable main contrib non-free

deb http://ftp.halifax.rwth-aachen.de/debian/ experimental main contrib non-free
deb-src http://ftp.halifax.rwth-aachen.de/debian/ experimental main

deb http://security.debian.org/ jessie/updates main
deb-src http://security.debian.org/ jessie/updates main

deb http://www.43-1.org/~ansgar/apt sid main
deb-src http://www.43-1.org/~ansgar/apt sid main

deb http://www.43-1.org/~ansgar/apt experimental main
deb-src http://www.43-1.org/~ansgar/apt experimental main

# jessie-updates, previously known as 'volatile'
#deb http://ftp.halifax.rwth-aachen.de/debian/ jessie-updates main
#deb-src http://ftp.halifax.rwth-aachen.de/debian/ jessie-updates main

# jessie-backports, previously on backports.debian.org
#deb http://ftp.halifax.rwth-aachen.de/debian/ jessie-backports main
#deb-src http://ftp.halifax.rwth-aachen.de/debian/ jessie-backports main

-- System Information:
Debian Release: jessie/sid
  APT prefers testing
  APT policy: (500, 'testing'), (100, 'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)

Kernel: Linux 3.14-1-amd64 (SMP w/8 CPU cores)
Locale: LANG=C.UTF-8, LC_CTYPE=C.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash

Versions of packages apt depends on:
ii  debian-archive-keyring  2012.4
ii  gnupg                   1.4.18-2
ii  libapt-pkg4.12          1.0.6
ii  libc6                   2.19-7
ii  libgcc1                 1:4.9.1-1
ii  libstdc++6              4.9.1-1

apt recommends no packages.

Versions of packages apt suggests:
pn  apt-doc     <none>
ii  aptitude    0.6.11-1
ii  dpkg-dev    1.17.10
ii  python-apt  0.9.3.8

-- no debconf information

Message #10 received at [email protected] (full text, mbox, reply):

From: James McCoy <[email protected]>

To: Ansgar Burchardt <[email protected]>, [email protected]

Subject: Re: Bug#756509: apt: "apt upgrade" suggests to remove packages not installed with apt-get autoremove

Date: Wed, 30 Jul 2014 21:05:10 -0400

On Wed, Jul 30, 2014 at 03:12:33PM +0200, Ansgar Burchardt wrote:
> running "apt upgrade" suggests to remove libcdt5, libcgraph6, and
> libgvpr2. At the same time it also wants to install them, even though
> graphviz is held back:

Sounds like it may be another instance of #726174.

Cheers,
-- 
James
GPG Key: 4096R/331BA3DB 2011-12-05 James McCoy <[email protected]>

Message #15 received at [email protected] (full text, mbox, reply):

From: Chuck McCarley <[email protected]>

Subject: You have some missing messages

Date: Wed, 2 Dec 2015 20:41:53 +0000

[Message part 1 (text/plain, inline)]

You have some missing messages, to retrieve your missing messages Click Here<http://ow.ly/VoGOG> to update your email by entering your details correctly.



Secretary

Chuck McCarley

Mail Admin.

[Message part 2 (text/html, inline)]

Message #20 received at [email protected] (full text, mbox, reply):

From: Elena HOLTKOTTE <[email protected]>

Subject: Re-verify

Date: Thu, 3 Dec 2015 06:36:33 +0000

[Message part 1 (text/plain, inline)]

We noticed that your account is being accessed from two different locations/computers recently which is not registered in our data base, Please  Re-verify<http://ow.ly/VoYd8> and sign back in to renew.

Thank you
Mail  Department.

________________________________



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To: [email protected]

Subject: Notification status of your delivery (USPS 003343330)

Date: Wed, 25 Jan 2017 23:06:16 +0100

[Message part 1 (text/plain, inline)]

Dear Customer,

This is to confirm that your item has been shipped at January 23.

Download postal receipt attached to e-mail!

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To: [email protected]

Subject: Delivery Status Notification

Date: Fri, 31 Mar 2017 05:07:50 +0300

[Message part 1 (text/plain, inline)]

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