CVS log for pkgsrc/biology/bwa/Makefile
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Default branch: MAIN
Revision 1.16: download - view: text, markup, annotated - select for diffs
Thu May 18 14:05:15 2023 UTC (17 months, 4 weeks ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2024Q3-base,
pkgsrc-2024Q3,
pkgsrc-2024Q2-base,
pkgsrc-2024Q2,
pkgsrc-2024Q1-base,
pkgsrc-2024Q1,
pkgsrc-2023Q4-base,
pkgsrc-2023Q4,
pkgsrc-2023Q3-base,
pkgsrc-2023Q3,
pkgsrc-2023Q2-base,
pkgsrc-2023Q2,
HEAD
Diff to: previous 1.15: preferred, colored
Changes since revision 1.15: +4 -3
lines
biology/bwa: Add support for aarch64 via devel/simde
May also work on other 64-bit architectures, but untested
Revision 1.15: download - view: text, markup, annotated - select for diffs
Wed Dec 28 15:27:16 2022 UTC (22 months, 2 weeks ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2023Q1-base,
pkgsrc-2023Q1
Diff to: previous 1.14: preferred, colored
Changes since revision 1.14: +2 -2
lines
Change MAINTAINER= to OWNER= on mission-critical packages
Revision 1.14: download - view: text, markup, annotated - select for diffs
Tue Jun 28 11:30:59 2022 UTC (2 years, 4 months ago) by wiz
Branches: MAIN
CVS tags: pkgsrc-2022Q4-base,
pkgsrc-2022Q4,
pkgsrc-2022Q3-base,
pkgsrc-2022Q3
Diff to: previous 1.13: preferred, colored
Changes since revision 1.13: +2 -2
lines
*: recursive bump for perl 5.36
Revision 1.13: download - view: text, markup, annotated - select for diffs
Mon May 24 19:49:10 2021 UTC (3 years, 5 months ago) by wiz
Branches: MAIN
CVS tags: pkgsrc-2022Q2-base,
pkgsrc-2022Q2,
pkgsrc-2022Q1-base,
pkgsrc-2022Q1,
pkgsrc-2021Q4-base,
pkgsrc-2021Q4,
pkgsrc-2021Q3-base,
pkgsrc-2021Q3,
pkgsrc-2021Q2-base,
pkgsrc-2021Q2
Diff to: previous 1.12: preferred, colored
Changes since revision 1.12: +2 -2
lines
*: recursive bump for perl 5.34
Revision 1.12: download - view: text, markup, annotated - select for diffs
Mon Aug 31 18:06:38 2020 UTC (4 years, 2 months ago) by wiz
Branches: MAIN
CVS tags: pkgsrc-2021Q1-base,
pkgsrc-2021Q1,
pkgsrc-2020Q4-base,
pkgsrc-2020Q4,
pkgsrc-2020Q3-base,
pkgsrc-2020Q3
Diff to: previous 1.11: preferred, colored
Changes since revision 1.11: +2 -2
lines
*: bump PKGREVISION for perl-5.32.
Revision 1.11: download - view: text, markup, annotated - select for diffs
Sun Jan 26 05:26:15 2020 UTC (4 years, 9 months ago) by rillig
Branches: MAIN
CVS tags: pkgsrc-2020Q2-base,
pkgsrc-2020Q2,
pkgsrc-2020Q1-base,
pkgsrc-2020Q1
Diff to: previous 1.10: preferred, colored
Changes since revision 1.10: +2 -2
lines
all: migrate some SourceForge homepage URLs back from https to http
https://mail-index.netbsd.org/pkgsrc-changes/2020/01/18/msg205146.html
In the above commit, the homepage URLs were migrated from http to https,
assuming that SourceForge would use the same host names for both http and
https connections. This assumption was wrong. Their documentation at
https://sourceforge.net/p/forge/documentation/Custom%20VHOSTs/ states
that the https URLs use the domain sourceforge.io instead.
To make the homepages from the above commit reachable again, pkglint has
been extended to check for reachable homepages. This check is only
enabled when the --network command line option is given.
Each of the homepages that referred to https://$project.sourceforge.net
before was migrated to https://$project.sourceforge.io (27), and if that
was not reachable, to the fallback URL http://$project.sourceforge.net
(163).
Revision 1.10: download - view: text, markup, annotated - select for diffs
Sat Jan 18 23:30:09 2020 UTC (4 years, 9 months ago) by rillig
Branches: MAIN
Diff to: previous 1.9: preferred, colored
Changes since revision 1.9: +2 -2
lines
all: migrate several HOMEPAGEs to https
pkglint --only "https instead of http" -r -F
With manual adjustments afterwards since pkglint 19.4.4 fixed a few
indentations in unrelated lines.
This mainly affects projects hosted at SourceForce, as well as
freedesktop.org, CTAN and GNU.
Revision 1.9: download - view: text, markup, annotated - select for diffs
Sat Nov 2 22:09:00 2019 UTC (5 years ago) by rillig
Branches: MAIN
CVS tags: pkgsrc-2019Q4-base,
pkgsrc-2019Q4
Diff to: previous 1.8: preferred, colored
Changes since revision 1.8: +2 -2
lines
biology: align variable assignments
pkglint -Wall -F --only aligned --only indent -r
Revision 1.8: download - view: text, markup, annotated - select for diffs
Sun Aug 11 13:17:59 2019 UTC (5 years, 3 months ago) by wiz
Branches: MAIN
CVS tags: pkgsrc-2019Q3-base,
pkgsrc-2019Q3
Diff to: previous 1.7: preferred, colored
Changes since revision 1.7: +2 -2
lines
Bump PKGREVISIONs for perl 5.30.0
Revision 1.7: download - view: text, markup, annotated - select for diffs
Wed Aug 22 09:42:59 2018 UTC (6 years, 2 months ago) by wiz
Branches: MAIN
CVS tags: pkgsrc-2019Q2-base,
pkgsrc-2019Q2,
pkgsrc-2019Q1-base,
pkgsrc-2019Q1,
pkgsrc-2018Q4-base,
pkgsrc-2018Q4,
pkgsrc-2018Q3-base,
pkgsrc-2018Q3
Diff to: previous 1.6: preferred, colored
Changes since revision 1.6: +2 -2
lines
Recursive bump for perl5-5.28.0
Revision 1.6: download - view: text, markup, annotated - select for diffs
Wed Dec 27 23:44:01 2017 UTC (6 years, 10 months ago) by he
Branches: MAIN
CVS tags: pkgsrc-2018Q2-base,
pkgsrc-2018Q2,
pkgsrc-2018Q1-base,
pkgsrc-2018Q1,
pkgsrc-2017Q4-base,
pkgsrc-2017Q4
Diff to: previous 1.5: preferred, colored
Changes since revision 1.5: +2 -1
lines
Re-add patch to bring timeval definition and select prototype into scope.
Bump PKGREVISION.
Revision 1.5: download - view: text, markup, annotated - select for diffs
Sun Dec 17 14:30:36 2017 UTC (6 years, 11 months ago) by bacon
Branches: MAIN
Diff to: previous 1.4: preferred, colored
Changes since revision 1.4: +5 -7
lines
biology/bwa: Update to 0.7.17
Numerous bug fixes, enhancements, and new command-line options
ok wiz@
Revision 1.4: download - view: text, markup, annotated - select for diffs
Sat Jul 9 06:37:51 2016 UTC (8 years, 4 months ago) by wiz
Branches: MAIN
CVS tags: pkgsrc-2017Q3-base,
pkgsrc-2017Q3,
pkgsrc-2017Q2-base,
pkgsrc-2017Q2,
pkgsrc-2017Q1-base,
pkgsrc-2017Q1,
pkgsrc-2016Q4-base,
pkgsrc-2016Q4,
pkgsrc-2016Q3-base,
pkgsrc-2016Q3
Diff to: previous 1.3: preferred, colored
Changes since revision 1.3: +2 -2
lines
Bump PKGREVISION for perl-5.24.0 for everything mentioning perl.
Revision 1.3: download - view: text, markup, annotated - select for diffs
Sat Dec 12 16:56:04 2015 UTC (8 years, 11 months ago) by wiedi
Branches: MAIN
CVS tags: pkgsrc-2016Q2-base,
pkgsrc-2016Q2,
pkgsrc-2016Q1-base,
pkgsrc-2016Q1,
pkgsrc-2015Q4-base,
pkgsrc-2015Q4
Diff to: previous 1.2: preferred, colored
Changes since revision 1.2: +5 -1
lines
Fix int types and network libs on SunOS
Revision 1.2: download - view: text, markup, annotated - select for diffs
Sat Nov 7 20:20:54 2015 UTC (9 years ago) by dholland
Branches: MAIN
Diff to: previous 1.1: preferred, colored
Changes since revision 1.1: +4 -4
lines
Unconditionally uses <emmintrin.h>, so restrict to x86.
Revision 1.1: download - view: text, markup, annotated - select for diffs
Wed Oct 14 17:12:52 2015 UTC (9 years, 1 month ago) by leot
Branches: MAIN
Import biology/bwa as bwa-0.7.9a.
Packaged in pkgsrc-wip by Jason Bacon.
BWA is a software package for mapping low-divergent sequences against a large
reference genome, such as the human genome.
CVSweb <[email protected]>